miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6685 3' -58.2 NC_001847.1 + 102244 0.68 0.632149
Target:  5'- gUCCAGGcGCUCGCGCgCGGcGCgCAc--- -3'
miRNA:   3'- -GGGUCC-CGAGCGUGaGCC-CG-GUuauu -5'
6685 3' -58.2 NC_001847.1 + 101183 0.66 0.781169
Target:  5'- gCCCGGcGCcagCGCGCUCGGGUUc---- -3'
miRNA:   3'- -GGGUCcCGa--GCGUGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 101070 0.72 0.418131
Target:  5'- cCCCGGGGC-CGcCGCggGGGCCGGg-- -3'
miRNA:   3'- -GGGUCCCGaGC-GUGagCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 99070 0.73 0.374826
Target:  5'- gCCCGGGGCcgccucuUCGUGCUgGGGCCu---- -3'
miRNA:   3'- -GGGUCCCG-------AGCGUGAgCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 98047 0.69 0.611642
Target:  5'- aCCAgcGGGCcgcucucCGCGCUCaggcGGGCCAGUAc -3'
miRNA:   3'- gGGU--CCCGa------GCGUGAG----CCCGGUUAUu -5'
6685 3' -58.2 NC_001847.1 + 97950 0.68 0.652654
Target:  5'- aCCGGGcGcCUCGCAC-CGGGCUc---- -3'
miRNA:   3'- gGGUCC-C-GAGCGUGaGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 97469 0.69 0.600386
Target:  5'- gCCAGGGCcgCGCGCUaagcccgCGGGCUu---- -3'
miRNA:   3'- gGGUCCCGa-GCGUGA-------GCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 96284 0.77 0.209099
Target:  5'- aCCGGGGC-CGUACUCGgGGCCGGc-- -3'
miRNA:   3'- gGGUCCCGaGCGUGAGC-CCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 95539 0.67 0.707496
Target:  5'- cCCUGGGGCUggggccgcgccgcagCaGCGCUgGGGCCAc--- -3'
miRNA:   3'- -GGGUCCCGA---------------G-CGUGAgCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 92406 0.68 0.673094
Target:  5'- aCCCAGGGgggCGCcagcccgaACUCGcGCCGGUAAg -3'
miRNA:   3'- -GGGUCCCga-GCG--------UGAGCcCGGUUAUU- -5'
6685 3' -58.2 NC_001847.1 + 90864 0.66 0.790372
Target:  5'- gCCGGGGCUgGUG-UCGaGGCCGGg-- -3'
miRNA:   3'- gGGUCCCGAgCGUgAGC-CCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 89692 0.67 0.743104
Target:  5'- aCCCGGGGUaUGCg--CGGGCCcAUGc -3'
miRNA:   3'- -GGGUCCCGaGCGugaGCCCGGuUAUu -5'
6685 3' -58.2 NC_001847.1 + 84641 0.66 0.771831
Target:  5'- gCCGcGGCUgcugCGCGCUCGGG-CGAUGu -3'
miRNA:   3'- gGGUcCCGA----GCGUGAGCCCgGUUAUu -5'
6685 3' -58.2 NC_001847.1 + 83036 0.67 0.70348
Target:  5'- gCCCGcGGCcgcuagUGCGCUUGGGCCGc--- -3'
miRNA:   3'- -GGGUcCCGa-----GCGUGAGCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 82918 0.73 0.399931
Target:  5'- gCCCGGGGgcuuuuuCUCGCugUCGaGGCCGc--- -3'
miRNA:   3'- -GGGUCCC-------GAGCGugAGC-CCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 82553 0.66 0.771831
Target:  5'- gCCCGcGGGCUCgGC-CUCGGccGCCGc--- -3'
miRNA:   3'- -GGGU-CCCGAG-CGuGAGCC--CGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 81167 0.67 0.730368
Target:  5'- gCCCgccgcgccgcucggAGGGCUCGCGg-CGGcGCCAGc-- -3'
miRNA:   3'- -GGG--------------UCCCGAGCGUgaGCC-CGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 79557 0.69 0.570873
Target:  5'- gCUGGGGCUCGCggggggcgccggGCUCGcGGCCu---- -3'
miRNA:   3'- gGGUCCCGAGCG------------UGAGC-CCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 79105 0.67 0.6934
Target:  5'- uCCCAGGGgUCGUcgUCGcGGUCAAa-- -3'
miRNA:   3'- -GGGUCCCgAGCGugAGC-CCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 78979 0.66 0.75279
Target:  5'- cCUCGGGGg-CGUGCUCGGGCg----- -3'
miRNA:   3'- -GGGUCCCgaGCGUGAGCCCGguuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.