miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6685 3' -58.2 NC_001847.1 + 39055 0.71 0.472776
Target:  5'- uCCCgcucguGGGGCUCGCGCagCGGGUUGAg-- -3'
miRNA:   3'- -GGG------UCCCGAGCGUGa-GCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 14320 0.67 0.7135
Target:  5'- uCCCGcuGCUCGCGgUgGGGCCGGg-- -3'
miRNA:   3'- -GGGUccCGAGCGUgAgCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 118878 0.7 0.511133
Target:  5'- aCCCGGGcGCUCgguGCACg-GGGCCGGg-- -3'
miRNA:   3'- -GGGUCC-CGAG---CGUGagCCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 68830 0.69 0.581017
Target:  5'- gCCgCAGGGCgccgCGaagaGCUCGGGCgCGAg-- -3'
miRNA:   3'- -GG-GUCCCGa---GCg---UGAGCCCG-GUUauu -5'
6685 3' -58.2 NC_001847.1 + 122872 0.69 0.621891
Target:  5'- uUCCGGGGC--GCGCUCGGGUgGu--- -3'
miRNA:   3'- -GGGUCCCGagCGUGAGCCCGgUuauu -5'
6685 3' -58.2 NC_001847.1 + 3811 0.67 0.7135
Target:  5'- gCCgGGcGGCggcggCGCGCUgcCGGGCCAc--- -3'
miRNA:   3'- -GGgUC-CCGa----GCGUGA--GCCCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 79105 0.67 0.6934
Target:  5'- uCCCAGGGgUCGUcgUCGcGGUCAAa-- -3'
miRNA:   3'- -GGGUCCCgAGCGugAGC-CCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 32100 0.67 0.6934
Target:  5'- gUCGGGGCgcgaggccCGgGCUCGGGCCc---- -3'
miRNA:   3'- gGGUCCCGa-------GCgUGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 2941 0.73 0.392287
Target:  5'- --gAGGGCUCGCACUCcGGcGCCGu--- -3'
miRNA:   3'- gggUCCCGAGCGUGAG-CC-CGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 61838 0.67 0.6934
Target:  5'- gCCAGGGUggugUCGUACUCcagGGGCgGGUc- -3'
miRNA:   3'- gGGUCCCG----AGCGUGAG---CCCGgUUAuu -5'
6685 3' -58.2 NC_001847.1 + 134913 0.67 0.6934
Target:  5'- gUCGGGGCgcgaggccCGgGCUCGGGCCc---- -3'
miRNA:   3'- gGGUCCCGa-------GCgUGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 34597 0.67 0.6934
Target:  5'- gCCCGGGcGCUgGCGCggCGGcgcGCCGAg-- -3'
miRNA:   3'- -GGGUCC-CGAgCGUGa-GCC---CGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 84641 0.66 0.771831
Target:  5'- gCCGcGGCUgcugCGCGCUCGGG-CGAUGu -3'
miRNA:   3'- gGGUcCCGA----GCGUGAGCCCgGUUAUu -5'
6685 3' -58.2 NC_001847.1 + 126391 0.66 0.775582
Target:  5'- cCCCGGGGCggaUGCGCUUaccuugccuuugccgGGGCUGGg-- -3'
miRNA:   3'- -GGGUCCCGa--GCGUGAG---------------CCCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 13118 0.66 0.781169
Target:  5'- gCCGGGGCgCGCGggCGGcGCCGc--- -3'
miRNA:   3'- gGGUCCCGaGCGUgaGCC-CGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 34284 0.67 0.70348
Target:  5'- gCUGGGcGC-CGCGCUCGcGGCCGu--- -3'
miRNA:   3'- gGGUCC-CGaGCGUGAGC-CCGGUuauu -5'
6685 3' -58.2 NC_001847.1 + 78232 0.66 0.790372
Target:  5'- uCCCGggcGGGUUCGCcCUgGaGGCCGAc-- -3'
miRNA:   3'- -GGGU---CCCGAGCGuGAgC-CCGGUUauu -5'
6685 3' -58.2 NC_001847.1 + 53017 0.7 0.540726
Target:  5'- -aCAGcGGCggccgcugCGCGCUCGGGCCu---- -3'
miRNA:   3'- ggGUC-CCGa-------GCGUGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 134208 0.7 0.540726
Target:  5'- uCCCcGGGCgCGgGCUCGGGCUu---- -3'
miRNA:   3'- -GGGuCCCGaGCgUGAGCCCGGuuauu -5'
6685 3' -58.2 NC_001847.1 + 13454 0.66 0.771831
Target:  5'- aUCUAgcGGGCgCGCaccuGCUCGGGCCGc--- -3'
miRNA:   3'- -GGGU--CCCGaGCG----UGAGCCCGGUuauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.