Results 1 - 20 of 410 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6686 | 3' | -47.4 | NC_001847.1 | + | 54940 | 0.66 | 0.99976 |
Target: 5'- gCCCUGCgcuucgcGGCGCAcccgcccGCAGaGGCg -3' miRNA: 3'- -GGGGCGa------CCGCGUuuuua--UGUUaUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 118470 | 0.66 | 0.99976 |
Target: 5'- gCCUGC-GGCGCAAG---GCccgGGCg -3' miRNA: 3'- gGGGCGaCCGCGUUUuuaUGuuaUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 103277 | 0.66 | 0.99976 |
Target: 5'- gCUCCGCcGGCaGCAAcgccgGCGAgcccgGGCg -3' miRNA: 3'- -GGGGCGaCCG-CGUUuuua-UGUUa----UCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 104000 | 0.66 | 0.99976 |
Target: 5'- gCCCGCgaaGGCcagccGCAGAA--ACGAcAGCg -3' miRNA: 3'- gGGGCGa--CCG-----CGUUUUuaUGUUaUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 15540 | 0.66 | 0.99976 |
Target: 5'- -gCUGCUGGCGCc--GGUGCGcgcGCg -3' miRNA: 3'- ggGGCGACCGCGuuuUUAUGUuauCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 14049 | 0.66 | 0.99976 |
Target: 5'- aCCgUCGC-GGCGCAGAGcgcaaGCAGcAGCa -3' miRNA: 3'- -GG-GGCGaCCGCGUUUUua---UGUUaUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 3141 | 0.66 | 0.99976 |
Target: 5'- gCCCCGCgagcaGCGUGGAGcaGCAGUuaacGCa -3' miRNA: 3'- -GGGGCGac---CGCGUUUUuaUGUUAu---CG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 69959 | 0.66 | 0.99976 |
Target: 5'- gUCCGCgGGCGCGAccAUAaacucCAGaGGCa -3' miRNA: 3'- gGGGCGaCCGCGUUuuUAU-----GUUaUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 78295 | 0.66 | 0.99976 |
Target: 5'- -gCCGCcgGGCGCAGAcg-GCGcgGcGCg -3' miRNA: 3'- ggGGCGa-CCGCGUUUuuaUGUuaU-CG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 36183 | 0.66 | 0.99976 |
Target: 5'- aCCCCuacGCcgUGGCGCGugggcucgcugAAGAUAUAA-GGCg -3' miRNA: 3'- -GGGG---CG--ACCGCGU-----------UUUUAUGUUaUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 81963 | 0.66 | 0.99976 |
Target: 5'- -aCCGCgGGCGCGcucaucACGcgGGCg -3' miRNA: 3'- ggGGCGaCCGCGUuuuua-UGUuaUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 82304 | 0.66 | 0.99976 |
Target: 5'- -aCCGg-GGCGgGAGAAUGCG--GGCg -3' miRNA: 3'- ggGGCgaCCGCgUUUUUAUGUuaUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 121967 | 0.66 | 0.99976 |
Target: 5'- gUCCGgUGGCGUGAAc-UGC-GUGGCu -3' miRNA: 3'- gGGGCgACCGCGUUUuuAUGuUAUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 14943 | 0.66 | 0.999748 |
Target: 5'- -aCCGCUGGCuGCuguGGUucauggacgccuCGAUGGCa -3' miRNA: 3'- ggGGCGACCG-CGuuuUUAu-----------GUUAUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 1431 | 0.66 | 0.999736 |
Target: 5'- gCCCCGCcaggcacuauuuGCGCucGGGUGCAuugAGCu -3' miRNA: 3'- -GGGGCGac----------CGCGuuUUUAUGUua-UCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 51228 | 0.66 | 0.999722 |
Target: 5'- gCCCUGCUcgcgGGCGCGccgcugccggccgauGAAAgugACGAgauGCa -3' miRNA: 3'- -GGGGCGA----CCGCGU---------------UUUUa--UGUUau-CG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 11334 | 0.66 | 0.999694 |
Target: 5'- -gCgGCUGGCGCcGGA--GCGggAGCa -3' miRNA: 3'- ggGgCGACCGCGuUUUuaUGUuaUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 132321 | 0.66 | 0.999694 |
Target: 5'- gCCCGCcGGCG--GAGGUGCc--GGCg -3' miRNA: 3'- gGGGCGaCCGCguUUUUAUGuuaUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 74034 | 0.66 | 0.999694 |
Target: 5'- -gCCGCUGGCGgAcgug-GCGcUGGCc -3' miRNA: 3'- ggGGCGACCGCgUuuuuaUGUuAUCG- -5' |
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6686 | 3' | -47.4 | NC_001847.1 | + | 1980 | 0.66 | 0.999694 |
Target: 5'- gCCCGCgcaGGUagcagGCAGAAAagGCGcUAGCu -3' miRNA: 3'- gGGGCGa--CCG-----CGUUUUUa-UGUuAUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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