miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6686 5' -50.9 NC_001847.1 + 104900 0.66 0.991076
Target:  5'- gCGCCccgcGGG------GCCCGCGCGg -3'
miRNA:   3'- gGCGGuaa-CCUaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 104828 0.66 0.993261
Target:  5'- gCCGCCGggGGGgcgggcGUCCGCaGCu -3'
miRNA:   3'- -GGCGGUaaCCUaaaaaaCGGGCG-CGc -5'
6686 5' -50.9 NC_001847.1 + 103961 0.68 0.973697
Target:  5'- aCCGUCGaUGGcgUcggcGCCCaGCGCGg -3'
miRNA:   3'- -GGCGGUaACCuaAaaaaCGGG-CGCGC- -5'
6686 5' -50.9 NC_001847.1 + 103736 0.72 0.868545
Target:  5'- cCCGCCGgcgccgGGAagcccgaGCCCGCGCc -3'
miRNA:   3'- -GGCGGUaa----CCUaaaaaa-CGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 103337 0.66 0.992229
Target:  5'- uCCGCgGagGGcaag--UGCCCGaCGCGg -3'
miRNA:   3'- -GGCGgUaaCCuaaaaaACGGGC-GCGC- -5'
6686 5' -50.9 NC_001847.1 + 103088 0.67 0.975319
Target:  5'- -aGCCcg-GGGgccgccgaGCCCGCGCGg -3'
miRNA:   3'- ggCGGuaaCCUaaaaaa--CGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 102913 0.67 0.976359
Target:  5'- uCCGCCccUGGGUccggcGCCCcGCGCc -3'
miRNA:   3'- -GGCGGuaACCUAaaaaaCGGG-CGCGc -5'
6686 5' -50.9 NC_001847.1 + 101378 0.69 0.939479
Target:  5'- gCGCCGcgGGGgc---UGCCCGCgGCGc -3'
miRNA:   3'- gGCGGUaaCCUaaaaaACGGGCG-CGC- -5'
6686 5' -50.9 NC_001847.1 + 101107 0.66 0.992964
Target:  5'- gCGCCGcgGGGcccaucgccugGCCCaGCGCGg -3'
miRNA:   3'- gGCGGUaaCCUaaaaaa-----CGGG-CGCGC- -5'
6686 5' -50.9 NC_001847.1 + 100813 0.67 0.979746
Target:  5'- uUGCCAUUGcGGccgaccucgGCCCGgGCGg -3'
miRNA:   3'- gGCGGUAAC-CUaaaaaa---CGGGCgCGC- -5'
6686 5' -50.9 NC_001847.1 + 100797 0.68 0.967734
Target:  5'- gCCGCCGUcaUGGcgUUUUUuagugcGCUCGcCGCa -3'
miRNA:   3'- -GGCGGUA--ACCuaAAAAA------CGGGC-GCGc -5'
6686 5' -50.9 NC_001847.1 + 99445 0.66 0.993261
Target:  5'- gCGCCAgcgUGGGag--UUGCgCaGCGCGc -3'
miRNA:   3'- gGCGGUa--ACCUaaaaAACGgG-CGCGC- -5'
6686 5' -50.9 NC_001847.1 + 96878 0.68 0.965771
Target:  5'- uCCGCgCuggGGAgggaccgccgUGCUCGCGCGg -3'
miRNA:   3'- -GGCG-GuaaCCUaaaaa-----ACGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 96864 0.68 0.972288
Target:  5'- gCCGCCAccugccgcc--GCCCGCGCGu -3'
miRNA:   3'- -GGCGGUaaccuaaaaaaCGGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 96599 0.69 0.948783
Target:  5'- gCUGCCAguaacgcGGGUUUUccUUGCgCGUGCGc -3'
miRNA:   3'- -GGCGGUaa-----CCUAAAA--AACGgGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 94248 0.69 0.953057
Target:  5'- gCGCCG-UGGAgcg---GCUCGCGCc -3'
miRNA:   3'- gGCGGUaACCUaaaaaaCGGGCGCGc -5'
6686 5' -50.9 NC_001847.1 + 93823 0.69 0.944257
Target:  5'- cCCGC---UGGAc--UUUGCgCCGCGCGa -3'
miRNA:   3'- -GGCGguaACCUaaaAAACG-GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 93782 0.66 0.986793
Target:  5'- gCCGCCGcUUGGcug----GuUCCGCGCGg -3'
miRNA:   3'- -GGCGGU-AACCuaaaaaaC-GGGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 92846 0.67 0.975843
Target:  5'- gCCGCCGUagaaauuUGGuucgaggacgugGCgCCGCGCGa -3'
miRNA:   3'- -GGCGGUA-------ACCuaaaaaa-----CG-GGCGCGC- -5'
6686 5' -50.9 NC_001847.1 + 92391 0.69 0.958245
Target:  5'- -gGCCGUccUGGAUcUgcuguccgccccgccGCCCGCGCGg -3'
miRNA:   3'- ggCGGUA--ACCUAaAaaa------------CGGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.