miRNA display CGI


Results 41 - 60 of 371 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6687 3' -53.4 NC_001847.1 + 71072 0.73 0.583921
Target:  5'- gGUGCuggcGGCGCucggccGGCGcGGCCAGAGg -3'
miRNA:   3'- -UACGuuu-UCGCGuu----CCGC-CCGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 63414 0.73 0.583921
Target:  5'- -cGCAcgGGAGCGCAcgcggcgccGGCGGGCCGGc- -3'
miRNA:   3'- uaCGU--UUUCGCGUu--------CCGCCCGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 22898 0.73 0.605344
Target:  5'- cUGCAAGAGCaugGCuGGGCuGGGCUggGGu -3'
miRNA:   3'- uACGUUUUCG---CGuUCCG-CCCGGuuUC- -5'
6687 3' -53.4 NC_001847.1 + 86628 0.73 0.573263
Target:  5'- -cGCGuAAGCGUGuGGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUuUUCGCGU-UCCGCCCGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 66980 0.73 0.573263
Target:  5'- cUGCAGAGGCGgGcugcGGcGCGGcGCCGGAGa -3'
miRNA:   3'- uACGUUUUCGCgU----UC-CGCC-CGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 134200 0.73 0.562651
Target:  5'- cGUGgAGcGGCGCGc-GCGGGCCGAGGg -3'
miRNA:   3'- -UACgUUuUCGCGUucCGCCCGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 70236 0.73 0.573263
Target:  5'- gGUGUGAc-GCGCGGGGCGGGCgGcGGg -3'
miRNA:   3'- -UACGUUuuCGCGUUCCGCCCGgUuUC- -5'
6687 3' -53.4 NC_001847.1 + 127294 0.73 0.594617
Target:  5'- cUGCA--GGCGCcaccGGCGGuGCCGGAGa -3'
miRNA:   3'- uACGUuuUCGCGuu--CCGCC-CGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 52568 0.73 0.605344
Target:  5'- cUGCGAGAGCuggagcuCGAGGCGGcgGCCGAGGc -3'
miRNA:   3'- uACGUUUUCGc------GUUCCGCC--CGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 125711 0.73 0.605344
Target:  5'- cUGCAAGAGCaugGCuGGGCuGGGCUggGGu -3'
miRNA:   3'- uACGUUUUCG---CGuUCCG-CCCGGuuUC- -5'
6687 3' -53.4 NC_001847.1 + 2093 0.73 0.616092
Target:  5'- -cGCGGGGcccGCGCGGcGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUUUU---CGCGUU-CCGCCCGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 68796 0.73 0.605344
Target:  5'- -gGCGGccGCGCGA-GCGGGCCGAc- -3'
miRNA:   3'- uaCGUUuuCGCGUUcCGCCCGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 8111 0.73 0.616092
Target:  5'- -gGCGccAGCGCAGGcGCGGGgccCCAGGGg -3'
miRNA:   3'- uaCGUuuUCGCGUUC-CGCCC---GGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 104906 0.73 0.616092
Target:  5'- -cGCGGGGcccGCGCGGcGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUUUU---CGCGUU-CCGCCCGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 59210 0.72 0.669855
Target:  5'- cGUGUGGcGGCGCAcGGCGGcGCCAc-- -3'
miRNA:   3'- -UACGUUuUCGCGUuCCGCC-CGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 25402 0.72 0.648384
Target:  5'- -cGCGGAAGCaCu--GCGGGCCAGGGg -3'
miRNA:   3'- uaCGUUUUCGcGuucCGCCCGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 19427 0.72 0.663424
Target:  5'- -aGCGGGAGCGCcaAAGGCcgcgcgcccgcugccGGGCCAGc- -3'
miRNA:   3'- uaCGUUUUCGCG--UUCCG---------------CCCGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 122816 0.72 0.659131
Target:  5'- -gGCAGGaccucgauGGCGCGcAGGUGGGCCGucAAGu -3'
miRNA:   3'- uaCGUUU--------UCGCGU-UCCGCCCGGU--UUC- -5'
6687 3' -53.4 NC_001847.1 + 132633 0.72 0.648384
Target:  5'- -gGCAgcAAAGCGCGAGGCGGcCCu--- -3'
miRNA:   3'- uaCGU--UUUCGCGUUCCGCCcGGuuuc -5'
6687 3' -53.4 NC_001847.1 + 114295 0.72 0.626855
Target:  5'- -gGCAGGGGCGUucuuGcCGGGCCAGGGa -3'
miRNA:   3'- uaCGUUUUCGCGuu--CcGCCCGGUUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.