miRNA display CGI


Results 41 - 60 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6687 3' -53.4 NC_001847.1 + 18987 0.71 0.701782
Target:  5'- aAUGCGAAaguuuAGCGCAcGGGCGGcGCCc--- -3'
miRNA:   3'- -UACGUUU-----UCGCGU-UCCGCC-CGGuuuc -5'
6687 3' -53.4 NC_001847.1 + 19077 0.66 0.94083
Target:  5'- cGUGCGAAAGUGCGcccCGGuGCCcGAGg -3'
miRNA:   3'- -UACGUUUUCGCGUuccGCC-CGGuUUC- -5'
6687 3' -53.4 NC_001847.1 + 19266 0.71 0.680545
Target:  5'- -cGCGAGccggcGGCGCAGcgucugugcGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUUU-----UCGCGUU---------CCGCCCGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 19427 0.72 0.663424
Target:  5'- -aGCGGGAGCGCcaAAGGCcgcgcgcccgcugccGGGCCAGc- -3'
miRNA:   3'- uaCGUUUUCGCG--UUCCG---------------CCCGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 19884 0.68 0.855224
Target:  5'- -gGC---GGCGCu-GGCGGGCgCGAGGu -3'
miRNA:   3'- uaCGuuuUCGCGuuCCGCCCG-GUUUC- -5'
6687 3' -53.4 NC_001847.1 + 19904 0.67 0.878753
Target:  5'- -nGUAGAAGCGCAcgaGGGCGucgccGCCGAc- -3'
miRNA:   3'- uaCGUUUUCGCGU---UCCGCc----CGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 20259 0.67 0.886118
Target:  5'- -cGCGAGAGCgagacgGCGAGGuCGGcGCCGc-- -3'
miRNA:   3'- uaCGUUUUCG------CGUUCC-GCC-CGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 20738 0.67 0.913051
Target:  5'- -gGaCAGAccGGCgGUGAGGCGGGCCu--- -3'
miRNA:   3'- uaC-GUUU--UCG-CGUUCCGCCCGGuuuc -5'
6687 3' -53.4 NC_001847.1 + 20899 0.67 0.900098
Target:  5'- -gGCAGcGAGCGCGucGCGGGCgAGc- -3'
miRNA:   3'- uaCGUU-UUCGCGUucCGCCCGgUUuc -5'
6687 3' -53.4 NC_001847.1 + 21558 0.66 0.94083
Target:  5'- uAUGaCAAGGGC-CGGGGagaGGGCgGGAGa -3'
miRNA:   3'- -UAC-GUUUUCGcGUUCCg--CCCGgUUUC- -5'
6687 3' -53.4 NC_001847.1 + 22157 0.71 0.722759
Target:  5'- -cGCAAAagccGGCGCA--GCGGGCCGGc- -3'
miRNA:   3'- uaCGUUU----UCGCGUucCGCCCGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 22187 0.71 0.701782
Target:  5'- -cGCGAAuGCGCGGGcGCuGGGCCGu-- -3'
miRNA:   3'- uaCGUUUuCGCGUUC-CG-CCCGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 22404 0.66 0.94083
Target:  5'- -cGCGGcGAGCGUgcucguccgcgGGGGCGgGGCCcGAGa -3'
miRNA:   3'- uaCGUU-UUCGCG-----------UUCCGC-CCGGuUUC- -5'
6687 3' -53.4 NC_001847.1 + 22461 0.71 0.722759
Target:  5'- -gGCAGAGGCgGCAggagccgucgcAGGUGGGgCAAGGc -3'
miRNA:   3'- uaCGUUUUCG-CGU-----------UCCGCCCgGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 22629 0.69 0.820765
Target:  5'- -cGCGcAGGGCGCGuccggggaGGGCGGGCUu--- -3'
miRNA:   3'- uaCGU-UUUCGCGU--------UCCGCCCGGuuuc -5'
6687 3' -53.4 NC_001847.1 + 22898 0.73 0.605344
Target:  5'- cUGCAAGAGCaugGCuGGGCuGGGCUggGGu -3'
miRNA:   3'- uACGUUUUCG---CGuUCCG-CCCGGuuUC- -5'
6687 3' -53.4 NC_001847.1 + 23271 0.68 0.83841
Target:  5'- cUGCAAugGAGCGCugcacGGGgGGGCgGAGc -3'
miRNA:   3'- uACGUU--UUCGCGu----UCCgCCCGgUUUc -5'
6687 3' -53.4 NC_001847.1 + 24341 0.67 0.906704
Target:  5'- gAUGUccAAGUGgAGGGgGGGCCcGAGc -3'
miRNA:   3'- -UACGuuUUCGCgUUCCgCCCGGuUUC- -5'
6687 3' -53.4 NC_001847.1 + 25104 0.66 0.924385
Target:  5'- -aGCAAgcGAGCGCAgagagaagagagcGGGCGGcgGCCGcGGc -3'
miRNA:   3'- uaCGUU--UUCGCGU-------------UCCGCC--CGGUuUC- -5'
6687 3' -53.4 NC_001847.1 + 25210 0.67 0.886118
Target:  5'- -gGCAAGAcCgGCAAGGUGGGCUg--- -3'
miRNA:   3'- uaCGUUUUcG-CGUUCCGCCCGGuuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.