miRNA display CGI


Results 21 - 40 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6687 3' -53.4 NC_001847.1 + 8129 0.66 0.94083
Target:  5'- -cGC---GGgGC-GGGCGGGCCGAc- -3'
miRNA:   3'- uaCGuuuUCgCGuUCCGCCCGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 8284 0.69 0.811654
Target:  5'- -cGCAagacAAAGCgGCAGGGCuccccgggGGGCCAGGc -3'
miRNA:   3'- uaCGU----UUUCG-CGUUCCG--------CCCGGUUUc -5'
6687 3' -53.4 NC_001847.1 + 9041 0.67 0.878753
Target:  5'- -cGCGAugcGGCGCGAGG-GGGCaauGGa -3'
miRNA:   3'- uaCGUUu--UCGCGUUCCgCCCGguuUC- -5'
6687 3' -53.4 NC_001847.1 + 10859 0.67 0.900098
Target:  5'- -gGCcGAGGCGC--GGCGGGCgCGGGc -3'
miRNA:   3'- uaCGuUUUCGCGuuCCGCCCG-GUUUc -5'
6687 3' -53.4 NC_001847.1 + 11192 0.67 0.886118
Target:  5'- -cGCugguccGCGCGGGGCuGGUCGAGGu -3'
miRNA:   3'- uaCGuuuu--CGCGUUCCGcCCGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 11301 0.66 0.921495
Target:  5'- -cGCGAAgaugGGCGCGcccgccgaggccggcGGGCGGcuggcGCCGGAGc -3'
miRNA:   3'- uaCGUUU----UCGCGU---------------UCCGCC-----CGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 12494 0.67 0.913051
Target:  5'- -gGCGGGGGCGgcCAAGaaccCGGGCCAGAc -3'
miRNA:   3'- uaCGUUUUCGC--GUUCc---GCCCGGUUUc -5'
6687 3' -53.4 NC_001847.1 + 12947 0.75 0.470332
Target:  5'- cGUGCGGuGGgGC--GGCGGGCCGGGGg -3'
miRNA:   3'- -UACGUUuUCgCGuuCCGCCCGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 13117 0.69 0.802363
Target:  5'- -gGCcGGGGCGCGcGGGCGGcGCCGc-- -3'
miRNA:   3'- uaCGuUUUCGCGU-UCCGCC-CGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 13374 0.69 0.796705
Target:  5'- -cGCGAAcggcgcgcacguccgGGCGCGccGCGGGCCcuGGg -3'
miRNA:   3'- uaCGUUU---------------UCGCGUucCGCCCGGuuUC- -5'
6687 3' -53.4 NC_001847.1 + 14096 0.7 0.773505
Target:  5'- -cGCGGAGGCGCu-GGCGGaCCAc-- -3'
miRNA:   3'- uaCGUUUUCGCGuuCCGCCcGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 14156 0.67 0.900098
Target:  5'- -cGCAGcGGCGgcCGGGGCGGccgcGCUAAAGg -3'
miRNA:   3'- uaCGUUuUCGC--GUUCCGCC----CGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 15324 0.71 0.680545
Target:  5'- -cGCG--GGCGUAgcggGGGCGGGCgGGGGg -3'
miRNA:   3'- uaCGUuuUCGCGU----UCCGCCCGgUUUC- -5'
6687 3' -53.4 NC_001847.1 + 15386 0.67 0.900098
Target:  5'- -gGCGGucGGCGuCGGGGCugGGGCCGGGu -3'
miRNA:   3'- uaCGUUu-UCGC-GUUCCG--CCCGGUUUc -5'
6687 3' -53.4 NC_001847.1 + 17492 0.67 0.913051
Target:  5'- -gGCAAGuuGCGgGGgucGGCGGGCgAAGGg -3'
miRNA:   3'- uaCGUUUu-CGCgUU---CCGCCCGgUUUC- -5'
6687 3' -53.4 NC_001847.1 + 17899 0.66 0.930511
Target:  5'- -aGCAGGauuAGgGCGAcGGCGG-CCAAGGu -3'
miRNA:   3'- uaCGUUU---UCgCGUU-CCGCCcGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 18082 0.67 0.913051
Target:  5'- -gGCGGAGGCG-AGGGCGaGGCUu--- -3'
miRNA:   3'- uaCGUUUUCGCgUUCCGC-CCGGuuuc -5'
6687 3' -53.4 NC_001847.1 + 18402 0.67 0.893234
Target:  5'- -cGCAGAAGCacagcgcggcguGCAGGGCcuuGGCCAc-- -3'
miRNA:   3'- uaCGUUUUCG------------CGUUCCGc--CCGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 18666 0.67 0.906704
Target:  5'- -gGCGGGAGUGCAGGuacGCGaGGCCc--- -3'
miRNA:   3'- uaCGUUUUCGCGUUC---CGC-CCGGuuuc -5'
6687 3' -53.4 NC_001847.1 + 18728 0.66 0.930511
Target:  5'- -aGCccAAGCGCGcGGCccgGGGcCCAGAGc -3'
miRNA:   3'- uaCGuuUUCGCGUuCCG---CCC-GGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.