miRNA display CGI


Results 21 - 40 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6687 3' -53.4 NC_001847.1 + 12947 0.75 0.470332
Target:  5'- cGUGCGGuGGgGC--GGCGGGCCGGGGg -3'
miRNA:   3'- -UACGUUuUCgCGuuCCGCCCGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 61318 0.75 0.480236
Target:  5'- -cGCGGGuGCGCGGGGCGGGgCGGGc -3'
miRNA:   3'- uaCGUUUuCGCGUUCCGCCCgGUUUc -5'
6687 3' -53.4 NC_001847.1 + 86606 0.75 0.49024
Target:  5'- -cGCGGcuccGGGCGCGccucgAGGCGGGCCAc-- -3'
miRNA:   3'- uaCGUU----UUCGCGU-----UCCGCCCGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 109478 0.75 0.500341
Target:  5'- -cGCAugAGAGCGCAGucGCGGGCCGAc- -3'
miRNA:   3'- uaCGU--UUUCGCGUUc-CGCCCGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 102673 0.75 0.500341
Target:  5'- -cGCGAGGGCgGgGGGGCGGGgCGGGGg -3'
miRNA:   3'- uaCGUUUUCG-CgUUCCGCCCgGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 27701 0.74 0.510532
Target:  5'- -cGCGcGAGCGCc-GGCGGGCCGc-- -3'
miRNA:   3'- uaCGUuUUCGCGuuCCGCCCGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 123292 0.74 0.510532
Target:  5'- -cGCGccgccCGCAGGGCGGcGCCAGAGg -3'
miRNA:   3'- uaCGUuuuc-GCGUUCCGCC-CGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 130514 0.74 0.510532
Target:  5'- -cGCGcGAGCGCc-GGCGGGCCGc-- -3'
miRNA:   3'- uaCGUuUUCGCGuuCCGCCCGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 5666 0.74 0.520808
Target:  5'- -cGCccAGGCGCgAAGGUGGGCCGGc- -3'
miRNA:   3'- uaCGuuUUCGCG-UUCCGCCCGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 100884 0.74 0.520808
Target:  5'- -gGCAGGGGCGCGGccGGCGGGagaCGGGGu -3'
miRNA:   3'- uaCGUUUUCGCGUU--CCGCCCg--GUUUC- -5'
6687 3' -53.4 NC_001847.1 + 108479 0.74 0.520808
Target:  5'- -cGCccAGGCGCgAAGGUGGGCCGGc- -3'
miRNA:   3'- uaCGuuUUCGCG-UUCCGCCCGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 132613 0.74 0.524942
Target:  5'- -gGCGGGAGCGCcgccggguccgagggAAGGaagaaGGGCCGAGGa -3'
miRNA:   3'- uaCGUUUUCGCG---------------UUCCg----CCCGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 29800 0.74 0.524942
Target:  5'- -gGCGGGAGCGCcgccggguccgagggAAGGaagaaGGGCCGAGGa -3'
miRNA:   3'- uaCGUUUUCGCG---------------UUCCg----CCCGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 81219 0.74 0.531165
Target:  5'- gAUGCAGGcucGGCgGCAGcggcGGCGGGCCAGGc -3'
miRNA:   3'- -UACGUUU---UCG-CGUU----CCGCCCGGUUUc -5'
6687 3' -53.4 NC_001847.1 + 40377 0.74 0.531165
Target:  5'- -aGCGGAAGCGgGGGGCGacggccccGGCCAAGa -3'
miRNA:   3'- uaCGUUUUCGCgUUCCGC--------CCGGUUUc -5'
6687 3' -53.4 NC_001847.1 + 133704 0.74 0.552093
Target:  5'- aAUGCAcccGAGCGCAAauagugccuGGCGGGCgCGGGGc -3'
miRNA:   3'- -UACGUu--UUCGCGUU---------CCGCCCG-GUUUC- -5'
6687 3' -53.4 NC_001847.1 + 134200 0.73 0.562651
Target:  5'- cGUGgAGcGGCGCGc-GCGGGCCGAGGg -3'
miRNA:   3'- -UACgUUuUCGCGUucCGCCCGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 86628 0.73 0.573263
Target:  5'- -cGCGuAAGCGUGuGGGCGGGCCGc-- -3'
miRNA:   3'- uaCGUuUUCGCGU-UCCGCCCGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 70236 0.73 0.573263
Target:  5'- gGUGUGAc-GCGCGGGGCGGGCgGcGGg -3'
miRNA:   3'- -UACGUUuuCGCGUUCCGCCCGgUuUC- -5'
6687 3' -53.4 NC_001847.1 + 66980 0.73 0.573263
Target:  5'- cUGCAGAGGCGgGcugcGGcGCGGcGCCGGAGa -3'
miRNA:   3'- uACGUUUUCGCgU----UC-CGCC-CGGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.