Results 21 - 40 of 371 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6687 | 3' | -53.4 | NC_001847.1 | + | 103299 | 0.66 | 0.935802 |
Target: 5'- -aGCGGcGGCgGCGGGGCGGccgcgcGCCAAc- -3' miRNA: 3'- uaCGUUuUCG-CGUUCCGCC------CGGUUuc -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 125217 | 0.66 | 0.94083 |
Target: 5'- -cGCGGcGAGCGUgcucguccgcgGGGGCGgGGCCcGAGa -3' miRNA: 3'- uaCGUU-UUCGCG-----------UUCCGC-CCGGuUUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 33693 | 0.66 | 0.940339 |
Target: 5'- -cGCAGGcgcucgcGGCGCGGcGGCGcguGGCCGAGc -3' miRNA: 3'- uaCGUUU-------UCGCGUU-CCGC---CCGGUUUc -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 63454 | 0.66 | 0.919135 |
Target: 5'- -cGCAGAcGCGgAcgcGGCGGGCCu--- -3' miRNA: 3'- uaCGUUUuCGCgUu--CCGCCCGGuuuc -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 82454 | 0.66 | 0.94083 |
Target: 5'- -gGCuccAGGCGC--GGCGGGCCc--- -3' miRNA: 3'- uaCGuu-UUCGCGuuCCGCCCGGuuuc -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 22404 | 0.66 | 0.94083 |
Target: 5'- -cGCGGcGAGCGUgcucguccgcgGGGGCGgGGCCcGAGa -3' miRNA: 3'- uaCGUU-UUCGCG-----------UUCCGC-CCGGuUUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 5881 | 0.66 | 0.94083 |
Target: 5'- -aGCGcuGcGCGCAGGGCGGccgcGCCGu-- -3' miRNA: 3'- uaCGUuuU-CGCGUUCCGCC----CGGUuuc -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 21558 | 0.66 | 0.94083 |
Target: 5'- uAUGaCAAGGGC-CGGGGagaGGGCgGGAGa -3' miRNA: 3'- -UAC-GUUUUCGcGUUCCg--CCCGgUUUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 127917 | 0.66 | 0.924385 |
Target: 5'- -aGCAAgcGAGCGCAgagagaagagagcGGGCGGcgGCCGcGGc -3' miRNA: 3'- uaCGUU--UUCGCGU-------------UCCGCC--CGGUuUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 106073 | 0.66 | 0.935802 |
Target: 5'- -gGCAGGGGCGCcGGcgccGCGcGGCCGGc- -3' miRNA: 3'- uaCGUUUUCGCGuUC----CGC-CCGGUUuc -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 121187 | 0.66 | 0.918538 |
Target: 5'- cAUGCGGGAgcggcacuuGCGCGGGGCGGccccccuGCCGcGGc -3' miRNA: 3'- -UACGUUUU---------CGCGUUCCGCC-------CGGUuUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 18728 | 0.66 | 0.930511 |
Target: 5'- -aGCccAAGCGCGcGGCccgGGGcCCAGAGc -3' miRNA: 3'- uaCGuuUUCGCGUuCCG---CCC-GGUUUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 124371 | 0.66 | 0.94083 |
Target: 5'- uAUGaCAAGGGC-CGGGGagaGGGCgGGAGa -3' miRNA: 3'- -UAC-GUUUUCGcGUUCCg--CCCGgUUUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 59246 | 0.66 | 0.94083 |
Target: 5'- -gGCGAuGGCGCc-GGCcaGGGCCAu-- -3' miRNA: 3'- uaCGUUuUCGCGuuCCG--CCCGGUuuc -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 81878 | 0.66 | 0.940339 |
Target: 5'- -cGCcuGGGCGCGcagcgccccgccgAGGCGGcGCCGcAGc -3' miRNA: 3'- uaCGuuUUCGCGU-------------UCCGCC-CGGUuUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 27267 | 0.66 | 0.935802 |
Target: 5'- -cGCGAGAGCcggauGUGAGGCugcccgccGGGCgAGAGg -3' miRNA: 3'- uaCGUUUUCG-----CGUUCCG--------CCCGgUUUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 135135 | 0.66 | 0.930511 |
Target: 5'- -cGCAGGGGgccCGCGcGGCGcGGCgCGGAGg -3' miRNA: 3'- uaCGUUUUC---GCGUuCCGC-CCG-GUUUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 29325 | 0.66 | 0.919135 |
Target: 5'- -aGCGAgccgcGAGCGCGAGugcGCGGGCg---- -3' miRNA: 3'- uaCGUU-----UUCGCGUUC---CGCCCGguuuc -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 83932 | 0.66 | 0.928872 |
Target: 5'- -aGCAGGGcccgcucgaagugcGCGCGGGGCcgGGGgCGGAGa -3' miRNA: 3'- uaCGUUUU--------------CGCGUUCCG--CCCgGUUUC- -5' |
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6687 | 3' | -53.4 | NC_001847.1 | + | 55084 | 0.66 | 0.924955 |
Target: 5'- -gGCGGccGCGgGGGGCGGGUgGGc- -3' miRNA: 3'- uaCGUUuuCGCgUUCCGCCCGgUUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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