miRNA display CGI


Results 41 - 60 of 371 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6687 3' -53.4 NC_001847.1 + 128184 0.66 0.924955
Target:  5'- -gGCAGGGG-GCGGcGGCaGGGCgGAGGg -3'
miRNA:   3'- uaCGUUUUCgCGUU-CCG-CCCGgUUUC- -5'
6687 3' -53.4 NC_001847.1 + 128023 0.67 0.886118
Target:  5'- -gGCAAGAcCgGCAAGGUGGGCUg--- -3'
miRNA:   3'- uaCGUUUUcG-CGUUCCGCCCGGuuuc -5'
6687 3' -53.4 NC_001847.1 + 127917 0.66 0.924385
Target:  5'- -aGCAAgcGAGCGCAgagagaagagagcGGGCGGcgGCCGcGGc -3'
miRNA:   3'- uaCGUU--UUCGCGU-------------UCCGCC--CGGUuUC- -5'
6687 3' -53.4 NC_001847.1 + 127294 0.73 0.594617
Target:  5'- cUGCA--GGCGCcaccGGCGGuGCCGGAGa -3'
miRNA:   3'- uACGUuuUCGCGuu--CCGCC-CGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 127154 0.67 0.906704
Target:  5'- gAUGUccAAGUGgAGGGgGGGCCcGAGc -3'
miRNA:   3'- -UACGuuUUCGCgUUCCgCCCGGuUUC- -5'
6687 3' -53.4 NC_001847.1 + 126084 0.68 0.83841
Target:  5'- cUGCAAugGAGCGCugcacGGGgGGGCgGAGc -3'
miRNA:   3'- uACGUU--UUCGCGu----UCCgCCCGgUUUc -5'
6687 3' -53.4 NC_001847.1 + 125813 0.67 0.913051
Target:  5'- -nGCGGgcGUGCAgcucaaagcGGGuCGGGCCGAGu -3'
miRNA:   3'- uaCGUUuuCGCGU---------UCC-GCCCGGUUUc -5'
6687 3' -53.4 NC_001847.1 + 125793 0.67 0.906704
Target:  5'- -gGCA--AGCGagucGGCGGGCCGGc- -3'
miRNA:   3'- uaCGUuuUCGCguu-CCGCCCGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 125711 0.73 0.605344
Target:  5'- cUGCAAGAGCaugGCuGGGCuGGGCUggGGu -3'
miRNA:   3'- uACGUUUUCG---CGuUCCG-CCCGGuuUC- -5'
6687 3' -53.4 NC_001847.1 + 125574 0.66 0.919135
Target:  5'- -cGCGGccGCGgGcGGCGGGCUGGAc -3'
miRNA:   3'- uaCGUUuuCGCgUuCCGCCCGGUUUc -5'
6687 3' -53.4 NC_001847.1 + 125517 0.71 0.701782
Target:  5'- -gGCGGGccGGCGCGGcGGCGGGCgCAGc- -3'
miRNA:   3'- uaCGUUU--UCGCGUU-CCGCCCG-GUUuc -5'
6687 3' -53.4 NC_001847.1 + 125465 0.67 0.900098
Target:  5'- -gGCGGGucGGCgGCAGcucgcGGCGGGCgCGAGGa -3'
miRNA:   3'- uaCGUUU--UCG-CGUU-----CCGCCCG-GUUUC- -5'
6687 3' -53.4 NC_001847.1 + 125442 0.69 0.820765
Target:  5'- -cGCGcAGGGCGCGuccggggaGGGCGGGCUu--- -3'
miRNA:   3'- uaCGU-UUUCGCGU--------UCCGCCCGGuuuc -5'
6687 3' -53.4 NC_001847.1 + 125274 0.71 0.722759
Target:  5'- -gGCAGAGGCgGCAggagccgucgcAGGUGGGgCAAGGc -3'
miRNA:   3'- uaCGUUUUCG-CGU-----------UCCGCCCgGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 125217 0.66 0.94083
Target:  5'- -cGCGGcGAGCGUgcucguccgcgGGGGCGgGGCCcGAGa -3'
miRNA:   3'- uaCGUU-UUCGCG-----------UUCCGC-CCGGuUUC- -5'
6687 3' -53.4 NC_001847.1 + 124970 0.71 0.722759
Target:  5'- -cGCAAAagccGGCGCA--GCGGGCCGGc- -3'
miRNA:   3'- uaCGUUU----UCGCGUucCGCCCGGUUuc -5'
6687 3' -53.4 NC_001847.1 + 124733 0.69 0.802363
Target:  5'- -cGCGAAccGCGCGGGGgaGGGCCGu-- -3'
miRNA:   3'- uaCGUUUu-CGCGUUCCg-CCCGGUuuc -5'
6687 3' -53.4 NC_001847.1 + 124644 0.66 0.930511
Target:  5'- -cGCAGcAGCGCGGGGCc-GUCGGGGa -3'
miRNA:   3'- uaCGUUuUCGCGUUCCGccCGGUUUC- -5'
6687 3' -53.4 NC_001847.1 + 124371 0.66 0.94083
Target:  5'- uAUGaCAAGGGC-CGGGGagaGGGCgGGAGa -3'
miRNA:   3'- -UAC-GUUUUCGcGUUCCg--CCCGgUUUC- -5'
6687 3' -53.4 NC_001847.1 + 123605 0.67 0.893234
Target:  5'- uUGCAAGcccAGC-CAAGGCGgcaaacucGGCCGGGGc -3'
miRNA:   3'- uACGUUU---UCGcGUUCCGC--------CCGGUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.