miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6687 5' -60.5 NC_001847.1 + 265 0.66 0.720985
Target:  5'- uCCUCCUCCCUCGcuccucCUCCCuCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu-----GAGGG-GCGAaaac -5'
6687 5' -60.5 NC_001847.1 + 102913 0.66 0.720985
Target:  5'- uCCgCCCCUgggUCCGGCgCCCCGCg---- -3'
miRNA:   3'- -GGgGGGGG---GGGUUGaGGGGCGaaaac -5'
6687 5' -60.5 NC_001847.1 + 100492 0.66 0.720985
Target:  5'- gCCgCCCCCUCGGCgCgCCGCUc--- -3'
miRNA:   3'- gGGgGGGGGGGUUGaGgGGCGAaaac -5'
6687 5' -60.5 NC_001847.1 + 77991 0.66 0.720985
Target:  5'- gCCCCUCgCCCAGCUCgUgGCa---- -3'
miRNA:   3'- gGGGGGGgGGGUUGAGgGgCGaaaac -5'
6687 5' -60.5 NC_001847.1 + 100 0.66 0.720985
Target:  5'- uCCgCCCCUgggUCCGGCgCCCCGCg---- -3'
miRNA:   3'- -GGgGGGGG---GGGUUGaGGGGCGaaaac -5'
6687 5' -60.5 NC_001847.1 + 105461 0.66 0.720985
Target:  5'- uUCgUCCUCCCCGucCUCCCCGUc---- -3'
miRNA:   3'- -GGgGGGGGGGGUu-GAGGGGCGaaaac -5'
6687 5' -60.5 NC_001847.1 + 6012 0.66 0.720985
Target:  5'- gCCgCCCCUCaCCCuuCUCCCuuuCGCgaUUGg -3'
miRNA:   3'- -GG-GGGGGG-GGGuuGAGGG---GCGaaAAC- -5'
6687 5' -60.5 NC_001847.1 + 108825 0.66 0.720985
Target:  5'- gCCgCCCCUCaCCCuuCUCCCuuuCGCgaUUGg -3'
miRNA:   3'- -GG-GGGGGG-GGGuuGAGGG---GCGaaAAC- -5'
6687 5' -60.5 NC_001847.1 + 405 0.66 0.720985
Target:  5'- uCCUCCUCCCUCGcuccucCUCCCuCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu-----GAGGG-GCGAaaac -5'
6687 5' -60.5 NC_001847.1 + 2648 0.66 0.720985
Target:  5'- uUCgUCCUCCCCGucCUCCCCGUc---- -3'
miRNA:   3'- -GGgGGGGGGGGUu-GAGGGGCGaaaac -5'
6687 5' -60.5 NC_001847.1 + 377 0.66 0.720985
Target:  5'- uCCUCCUCCCUCGcuccucCUCCCuCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu-----GAGGG-GCGAaaac -5'
6687 5' -60.5 NC_001847.1 + 349 0.66 0.720985
Target:  5'- uCCUCCUCCCUCGcuccucCUCCCuCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu-----GAGGG-GCGAaaac -5'
6687 5' -60.5 NC_001847.1 + 237 0.66 0.720985
Target:  5'- uCCUCCUCCCUCGcuccucCUCCCuCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu-----GAGGG-GCGAaaac -5'
6687 5' -60.5 NC_001847.1 + 321 0.66 0.720985
Target:  5'- uCCUCCUCCCUCGcuccucCUCCCuCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu-----GAGGG-GCGAaaac -5'
6687 5' -60.5 NC_001847.1 + 293 0.66 0.720985
Target:  5'- uCCUCCUCCCUCGcuccucCUCCCuCGCUc--- -3'
miRNA:   3'- -GGGGGGGGGGGUu-----GAGGG-GCGAaaac -5'
6687 5' -60.5 NC_001847.1 + 40239 0.66 0.711312
Target:  5'- aCCCCCagCCCCGGCUggCCCGUg---- -3'
miRNA:   3'- gGGGGGg-GGGGUUGAg-GGGCGaaaac -5'
6687 5' -60.5 NC_001847.1 + 36406 0.66 0.711312
Target:  5'- cCCCggCCCCggCCCCGGC-CCCgGCUUc-- -3'
miRNA:   3'- -GGG--GGGG--GGGGUUGaGGGgCGAAaac -5'
6687 5' -60.5 NC_001847.1 + 73826 0.66 0.711312
Target:  5'- gCCCgCCCCgCCCCG-CgcaCCCGCg---- -3'
miRNA:   3'- -GGG-GGGG-GGGGUuGag-GGGCGaaaac -5'
6687 5' -60.5 NC_001847.1 + 124817 0.66 0.701574
Target:  5'- uCCUCCCCCUCCucguccgcCUCCUCGUc---- -3'
miRNA:   3'- -GGGGGGGGGGGuu------GAGGGGCGaaaac -5'
6687 5' -60.5 NC_001847.1 + 63728 0.66 0.701574
Target:  5'- aCCCUCCCCCCGGCcgagcaacagCgCCGCc---- -3'
miRNA:   3'- gGGGGGGGGGGUUGa---------GgGGCGaaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.