miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6688 3' -59.7 NC_001847.1 + 39831 0.68 0.56565
Target:  5'- ----cGGCCCUgCCGGcGcCGCGCCUGGa -3'
miRNA:   3'- uccauUCGGGAgGGUC-C-GCGUGGACU- -5'
6688 3' -59.7 NC_001847.1 + 48527 0.66 0.69709
Target:  5'- -cGUuguGGCCCgCCUcgAGGCGCGCCcgGAg -3'
miRNA:   3'- ucCAu--UCGGGaGGG--UCCGCGUGGa-CU- -5'
6688 3' -59.7 NC_001847.1 + 50018 0.66 0.687068
Target:  5'- -----cGCCUgcugggcCCCGGGCGCGCCgUGAu -3'
miRNA:   3'- uccauuCGGGa------GGGUCCGCGUGG-ACU- -5'
6688 3' -59.7 NC_001847.1 + 53807 0.71 0.397773
Target:  5'- gAGGUcuGCgCC-CCCuGGCGCGCCgGAg -3'
miRNA:   3'- -UCCAuuCG-GGaGGGuCCGCGUGGaCU- -5'
6688 3' -59.7 NC_001847.1 + 58639 0.71 0.389392
Target:  5'- -cGUAGGCCgcgaacacgggCUCCCAGGCGCugCa-- -3'
miRNA:   3'- ucCAUUCGG-----------GAGGGUCCGCGugGacu -5'
6688 3' -59.7 NC_001847.1 + 60024 0.7 0.487533
Target:  5'- cGGGgcccGGGCCUUCUCGGGCaaGCGCCgGGg -3'
miRNA:   3'- -UCCa---UUCGGGAGGGUCCG--CGUGGaCU- -5'
6688 3' -59.7 NC_001847.1 + 62653 0.66 0.677001
Target:  5'- cGGcGAGCCCggcuauuauagCCUcaAGGCGCGCCg-- -3'
miRNA:   3'- uCCaUUCGGGa----------GGG--UCCGCGUGGacu -5'
6688 3' -59.7 NC_001847.1 + 67072 0.7 0.459541
Target:  5'- cGGcGUucGCCCcgCCgCAGGCGCGCCg-- -3'
miRNA:   3'- -UC-CAuuCGGGa-GG-GUCCGCGUGGacu -5'
6688 3' -59.7 NC_001847.1 + 71125 0.69 0.506634
Target:  5'- cGGGcAAGCCCgucccgccgCCCGGGUagagcucgcgGCACUUGAg -3'
miRNA:   3'- -UCCaUUCGGGa--------GGGUCCG----------CGUGGACU- -5'
6688 3' -59.7 NC_001847.1 + 73649 0.66 0.716963
Target:  5'- ---gGAGCagaUCCC-GGCGUACCUGGa -3'
miRNA:   3'- uccaUUCGgg-AGGGuCCGCGUGGACU- -5'
6688 3' -59.7 NC_001847.1 + 75323 0.72 0.364953
Target:  5'- gGGGUAGGCCaccgcgCUCCCGGGCGgGCg--- -3'
miRNA:   3'- -UCCAUUCGG------GAGGGUCCGCgUGgacu -5'
6688 3' -59.7 NC_001847.1 + 78312 0.67 0.64357
Target:  5'- cGGcUGGGCCgcccccuccccgcgCcCCCAGGCGCGCCg-- -3'
miRNA:   3'- uCC-AUUCGG--------------GaGGGUCCGCGUGGacu -5'
6688 3' -59.7 NC_001847.1 + 83548 0.68 0.604969
Target:  5'- gGGGUGGagcacuGCCCUCCCGacGGCugccccgGCGCCgcgGAa -3'
miRNA:   3'- -UCCAUU------CGGGAGGGU--CCG-------CGUGGa--CU- -5'
6688 3' -59.7 NC_001847.1 + 91887 0.69 0.497042
Target:  5'- cAGGU--GCCC-CCCGGGCGCcgcGCCg-- -3'
miRNA:   3'- -UCCAuuCGGGaGGGUCCGCG---UGGacu -5'
6688 3' -59.7 NC_001847.1 + 92918 0.72 0.341595
Target:  5'- aAGGUGaacuauuuGGCCUUUUC-GGCGCGCCUGGc -3'
miRNA:   3'- -UCCAU--------UCGGGAGGGuCCGCGUGGACU- -5'
6688 3' -59.7 NC_001847.1 + 93495 0.72 0.381127
Target:  5'- gGGGUAcuucucgcGGCCC-CCC-GGCGCGCCg-- -3'
miRNA:   3'- -UCCAU--------UCGGGaGGGuCCGCGUGGacu -5'
6688 3' -59.7 NC_001847.1 + 94160 0.71 0.389392
Target:  5'- cAGGUGAGCgCggCCC-GGCGCaACCUGc -3'
miRNA:   3'- -UCCAUUCGgGa-GGGuCCGCG-UGGACu -5'
6688 3' -59.7 NC_001847.1 + 96975 0.67 0.626291
Target:  5'- cGGGUAcGGCCgCUUCCGgucccucggggcGGCGCGCCg-- -3'
miRNA:   3'- -UCCAU-UCGG-GAGGGU------------CCGCGUGGacu -5'
6688 3' -59.7 NC_001847.1 + 101157 0.69 0.497042
Target:  5'- aAGGcUGGGCCCagCCCGGccaGCGCGCCcGGc -3'
miRNA:   3'- -UCC-AUUCGGGa-GGGUC---CGCGUGGaCU- -5'
6688 3' -59.7 NC_001847.1 + 103036 0.67 0.626291
Target:  5'- cGG-GGGCCCgagCCCGGGCcucGCGCCccGAc -3'
miRNA:   3'- uCCaUUCGGGa--GGGUCCG---CGUGGa-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.