Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6688 | 3' | -59.7 | NC_001847.1 | + | 223 | 0.67 | 0.626291 |
Target: 5'- cGG-GGGCCCgagCCCGGGCcucGCGCCccGAc -3' miRNA: 3'- uCCaUUCGGGa--GGGUCCG---CGUGGa-CU- -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 3412 | 0.66 | 0.716963 |
Target: 5'- cGGGaGAGCag-CCCGGGgGCGCCa-- -3' miRNA: 3'- -UCCaUUCGggaGGGUCCgCGUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 5678 | 0.69 | 0.511459 |
Target: 5'- aAGGUGGGCCggccggggccgCCCagacccggcaguucAGGUGCGCCUGGg -3' miRNA: 3'- -UCCAUUCGGga---------GGG--------------UCCGCGUGGACU- -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 6319 | 0.69 | 0.535858 |
Target: 5'- uGGUuGGCCCUUUuuGuGCGCGCCUGc -3' miRNA: 3'- uCCAuUCGGGAGGguC-CGCGUGGACu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 7926 | 0.72 | 0.364953 |
Target: 5'- aAGG-AAGaCCCUCCCGcGCGCGCCg-- -3' miRNA: 3'- -UCCaUUC-GGGAGGGUcCGCGUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 9690 | 0.67 | 0.646618 |
Target: 5'- cGGGgcaagcccGCCCUCCCcGGaCGCGCCc-- -3' miRNA: 3'- -UCCauu-----CGGGAGGGuCC-GCGUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 9748 | 0.68 | 0.56565 |
Target: 5'- cGGGcGGGCCCUgCCCcGGgGCGCCc-- -3' miRNA: 3'- -UCCaUUCGGGA-GGGuCCgCGUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 10219 | 0.7 | 0.478111 |
Target: 5'- cAGGgcGcGCCCgcugucgcCCCcGGCGCGCCUGc -3' miRNA: 3'- -UCCauU-CGGGa-------GGGuCCGCGUGGACu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 15124 | 0.66 | 0.716963 |
Target: 5'- aGGGccUAGGCCgCUcaCCCGGGCaGCGCgCUGu -3' miRNA: 3'- -UCC--AUUCGG-GA--GGGUCCG-CGUG-GACu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 19854 | 0.67 | 0.636456 |
Target: 5'- ----uGGCCCgcgCCCGGGgGCGCCg-- -3' miRNA: 3'- uccauUCGGGa--GGGUCCgCGUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 21635 | 0.66 | 0.677001 |
Target: 5'- cGGcgcGGGCCgCgCCCGGGCGCgACCgGAg -3' miRNA: 3'- uCCa--UUCGG-GaGGGUCCGCG-UGGaCU- -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 23787 | 0.68 | 0.605983 |
Target: 5'- cGGU-AGCCCUCUCGGGacccCACgUGAg -3' miRNA: 3'- uCCAuUCGGGAGGGUCCgc--GUGgACU- -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 26320 | 0.68 | 0.595853 |
Target: 5'- uGGGgcAGCgUcCCCAGGCGCGCg--- -3' miRNA: 3'- -UCCauUCGgGaGGGUCCGCGUGgacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 26348 | 0.68 | 0.56565 |
Target: 5'- cGGcGUAcaugcAGCUCUCCCGGGUGgGCCg-- -3' miRNA: 3'- -UC-CAU-----UCGGGAGGGUCCGCgUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 26615 | 1.08 | 0.001099 |
Target: 5'- cAGGUAAGCCCUCCCAGGCGCACCUGAa -3' miRNA: 3'- -UCCAUUCGGGAGGGUCCGCGUGGACU- -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 27060 | 0.7 | 0.478111 |
Target: 5'- gAGGcccgcAGCCC-CCCGGGCGgCACCg-- -3' miRNA: 3'- -UCCau---UCGGGaGGGUCCGC-GUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 32246 | 0.67 | 0.626291 |
Target: 5'- aGGGgcgGAGCCCagagcgggCCCGGGCcCGCCg-- -3' miRNA: 3'- -UCCa--UUCGGGa-------GGGUCCGcGUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 35284 | 0.66 | 0.69709 |
Target: 5'- gAGGUAacguacugcgcAGCCCcgCCgAgcGGCGCGCgCUGGa -3' miRNA: 3'- -UCCAU-----------UCGGGa-GGgU--CCGCGUG-GACU- -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 36261 | 0.68 | 0.58575 |
Target: 5'- cGGccUGGGCCg-CCCAGGCGCACg--- -3' miRNA: 3'- uCC--AUUCGGgaGGGUCCGCGUGgacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 39608 | 0.67 | 0.646618 |
Target: 5'- cGGcgcGGCCCcagcCCCAGGgGCaaGCCUGGc -3' miRNA: 3'- uCCau-UCGGGa---GGGUCCgCG--UGGACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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