Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6688 | 3' | -59.7 | NC_001847.1 | + | 124448 | 0.66 | 0.677001 |
Target: 5'- cGGcgcGGGCCgCgCCCGGGCGCgACCgGAg -3' miRNA: 3'- uCCa--UUCGG-GaGGGUCCGCG-UGGaCU- -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 21635 | 0.66 | 0.677001 |
Target: 5'- cGGcgcGGGCCgCgCCCGGGCGCgACCgGAg -3' miRNA: 3'- uCCa--UUCGG-GaGGGUCCGCG-UGGaCU- -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 50018 | 0.66 | 0.687068 |
Target: 5'- -----cGCCUgcugggcCCCGGGCGCGCCgUGAu -3' miRNA: 3'- uccauuCGGGa------GGGUCCGCGUGG-ACU- -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 48527 | 0.66 | 0.69709 |
Target: 5'- -cGUuguGGCCCgCCUcgAGGCGCGCCcgGAg -3' miRNA: 3'- ucCAu--UCGGGaGGG--UCCGCGUGGa-CU- -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 128030 | 0.66 | 0.69709 |
Target: 5'- cAGGagGAGCCCggCCguGGCGCcuACgUGGu -3' miRNA: 3'- -UCCa-UUCGGGa-GGguCCGCG--UGgACU- -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 104481 | 0.66 | 0.69709 |
Target: 5'- cGGGUA-GCCCUCCaaCAGcGCcaGCACCg-- -3' miRNA: 3'- -UCCAUuCGGGAGG--GUC-CG--CGUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 15124 | 0.66 | 0.716963 |
Target: 5'- aGGGccUAGGCCgCUcaCCCGGGCaGCGCgCUGu -3' miRNA: 3'- -UCC--AUUCGG-GA--GGGUCCG-CGUG-GACu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 73649 | 0.66 | 0.716963 |
Target: 5'- ---gGAGCagaUCCC-GGCGUACCUGGa -3' miRNA: 3'- uccaUUCGgg-AGGGuCCGCGUGGACU- -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 3412 | 0.66 | 0.716963 |
Target: 5'- cGGGaGAGCag-CCCGGGgGCGCCa-- -3' miRNA: 3'- -UCCaUUCGggaGGGUCCgCGUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 35284 | 0.66 | 0.69709 |
Target: 5'- gAGGUAacguacugcgcAGCCCcgCCgAgcGGCGCGCgCUGGa -3' miRNA: 3'- -UCCAU-----------UCGGGa-GGgU--CCGCGUG-GACU- -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 62653 | 0.66 | 0.677001 |
Target: 5'- cGGcGAGCCCggcuauuauagCCUcaAGGCGCGCCg-- -3' miRNA: 3'- uCCaUUCGGGa----------GGG--UCCGCGUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 103889 | 0.67 | 0.656768 |
Target: 5'- cAGGUgcacgaucGAGCacaUUUCCGGGCGCGCCc-- -3' miRNA: 3'- -UCCA--------UUCGg--GAGGGUCCGCGUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 9690 | 0.67 | 0.646618 |
Target: 5'- cGGGgcaagcccGCCCUCCCcGGaCGCGCCc-- -3' miRNA: 3'- -UCCauu-----CGGGAGGGuCC-GCGUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 19854 | 0.67 | 0.636456 |
Target: 5'- ----uGGCCCgcgCCCGGGgGCGCCg-- -3' miRNA: 3'- uccauUCGGGa--GGGUCCgCGUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 96975 | 0.67 | 0.626291 |
Target: 5'- cGGGUAcGGCCgCUUCCGgucccucggggcGGCGCGCCg-- -3' miRNA: 3'- -UCCAU-UCGG-GAGGGU------------CCGCGUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 103036 | 0.67 | 0.626291 |
Target: 5'- cGG-GGGCCCgagCCCGGGCcucGCGCCccGAc -3' miRNA: 3'- uCCaUUCGGGa--GGGUCCG---CGUGGa-CU- -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 135059 | 0.67 | 0.626291 |
Target: 5'- aGGGgcgGAGCCCagagcgggCCCGGGCcCGCCg-- -3' miRNA: 3'- -UCCa--UUCGGGa-------GGGUCCGcGUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 78312 | 0.67 | 0.64357 |
Target: 5'- cGGcUGGGCCgcccccuccccgcgCcCCCAGGCGCGCCg-- -3' miRNA: 3'- uCC-AUUCGG--------------GaGGGUCCGCGUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 39608 | 0.67 | 0.646618 |
Target: 5'- cGGcgcGGCCCcagcCCCAGGgGCaaGCCUGGc -3' miRNA: 3'- uCCau-UCGGGa---GGGUCCgCG--UGGACU- -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 112503 | 0.67 | 0.646618 |
Target: 5'- cGGGgcaagcccGCCCUCCCcGGaCGCGCCc-- -3' miRNA: 3'- -UCCauu-----CGGGAGGGuCC-GCGUGGacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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