Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6688 | 3' | -59.7 | NC_001847.1 | + | 26615 | 1.08 | 0.001099 |
Target: 5'- cAGGUAAGCCCUCCCAGGCGCACCUGAa -3' miRNA: 3'- -UCCAUUCGGGAGGGUCCGCGUGGACU- -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 129428 | 1.08 | 0.001099 |
Target: 5'- cAGGUAAGCCCUCCCAGGCGCACCUGAa -3' miRNA: 3'- -UCCAUUCGGGAGGGUCCGCGUGGACU- -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 75323 | 0.72 | 0.364953 |
Target: 5'- gGGGUAGGCCaccgcgCUCCCGGGCGgGCg--- -3' miRNA: 3'- -UCCAUUCGG------GAGGGUCCGCgUGgacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 110739 | 0.72 | 0.364953 |
Target: 5'- aAGG-AAGaCCCUCCCGcGCGCGCCg-- -3' miRNA: 3'- -UCCaUUC-GGGAGGGUcCGCGUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 7926 | 0.72 | 0.364953 |
Target: 5'- aAGG-AAGaCCCUCCCGcGCGCGCCg-- -3' miRNA: 3'- -UCCaUUC-GGGAGGGUcCGCGUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 92918 | 0.72 | 0.341595 |
Target: 5'- aAGGUGaacuauuuGGCCUUUUC-GGCGCGCCUGGc -3' miRNA: 3'- -UCCAU--------UCGGGAGGGuCCGCGUGGACU- -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 93495 | 0.72 | 0.381127 |
Target: 5'- gGGGUAcuucucgcGGCCC-CCC-GGCGCGCCg-- -3' miRNA: 3'- -UCCAU--------UCGGGaGGGuCCGCGUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 53807 | 0.71 | 0.397773 |
Target: 5'- gAGGUcuGCgCC-CCCuGGCGCGCCgGAg -3' miRNA: 3'- -UCCAuuCG-GGaGGGuCCGCGUGGaCU- -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 118455 | 0.71 | 0.406269 |
Target: 5'- uGGUGGcggccucguGCCUgcggcgcaaggCCCGGGCGCGCCUGu -3' miRNA: 3'- uCCAUU---------CGGGa----------GGGUCCGCGUGGACu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 94160 | 0.71 | 0.389392 |
Target: 5'- cAGGUGAGCgCggCCC-GGCGCaACCUGc -3' miRNA: 3'- -UCCAUUCGgGa-GGGuCCGCG-UGGACu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 58639 | 0.71 | 0.389392 |
Target: 5'- -cGUAGGCCgcgaacacgggCUCCCAGGCGCugCa-- -3' miRNA: 3'- ucCAUUCGG-----------GAGGGUCCGCGugGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 120676 | 0.71 | 0.389392 |
Target: 5'- cGGUGAGCCCggagaCCCAGaggccgcggccGCGCACCc-- -3' miRNA: 3'- uCCAUUCGGGa----GGGUC-----------CGCGUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 67072 | 0.7 | 0.459541 |
Target: 5'- cGGcGUucGCCCcgCCgCAGGCGCGCCg-- -3' miRNA: 3'- -UC-CAuuCGGGa-GG-GUCCGCGUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 113032 | 0.7 | 0.478111 |
Target: 5'- cAGGgcGcGCCCgcugucgcCCCcGGCGCGCCUGc -3' miRNA: 3'- -UCCauU-CGGGa-------GGGuCCGCGUGGACu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 10219 | 0.7 | 0.478111 |
Target: 5'- cAGGgcGcGCCCgcugucgcCCCcGGCGCGCCUGc -3' miRNA: 3'- -UCCauU-CGGGa-------GGGuCCGCGUGGACu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 27060 | 0.7 | 0.478111 |
Target: 5'- gAGGcccgcAGCCC-CCCGGGCGgCACCg-- -3' miRNA: 3'- -UCCau---UCGGGaGGGUCCGC-GUGGacu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 60024 | 0.7 | 0.487533 |
Target: 5'- cGGGgcccGGGCCUUCUCGGGCaaGCGCCgGGg -3' miRNA: 3'- -UCCa---UUCGGGAGGGUCCG--CGUGGaCU- -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 109132 | 0.69 | 0.535858 |
Target: 5'- uGGUuGGCCCUUUuuGuGCGCGCCUGc -3' miRNA: 3'- uCCAuUCGGGAGGguC-CGCGUGGACu -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 5678 | 0.69 | 0.511459 |
Target: 5'- aAGGUGGGCCggccggggccgCCCagacccggcaguucAGGUGCGCCUGGg -3' miRNA: 3'- -UCCAUUCGGga---------GGG--------------UCCGCGUGGACU- -5' |
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6688 | 3' | -59.7 | NC_001847.1 | + | 6319 | 0.69 | 0.535858 |
Target: 5'- uGGUuGGCCCUUUuuGuGCGCGCCUGc -3' miRNA: 3'- uCCAuUCGGGAGGguC-CGCGUGGACu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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