Results 1 - 20 of 391 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 106 | 0.7 | 0.194073 |
Target: 5'- -cCUGGGUccggcgccccGcGCCCCGGCCccGCCCGCg -3' miRNA: 3'- caGACCCG----------C-CGGGGCCGGc-CGGGUGg -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 141 | 0.7 | 0.20325 |
Target: 5'- ---cGGGCcucgGGCCCCGGCCGGgggGCCg -3' miRNA: 3'- cagaCCCG----CCGGGGCCGGCCgggUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 354 | 0.67 | 0.290833 |
Target: 5'- ---cGGGCuucgcGCCCCGG--GGCCCGCCc -3' miRNA: 3'- cagaCCCGc----CGGGGCCggCCGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 482 | 0.72 | 0.142865 |
Target: 5'- cGUCaUGGGUGcccgcGCCuCCGcgccugcuGCCGGCCCGCCc -3' miRNA: 3'- -CAG-ACCCGC-----CGG-GGC--------CGGCCGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 746 | 0.72 | 0.142865 |
Target: 5'- -----cGCgGGCCCCccuagggcgaGGCCGGCCCGCCg -3' miRNA: 3'- cagaccCG-CCGGGG----------CCGGCCGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 897 | 0.74 | 0.096901 |
Target: 5'- ---gGGGCcgccgcGGCCgCCGGCCGccGCCCGCCg -3' miRNA: 3'- cagaCCCG------CCGG-GGCCGGC--CGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 914 | 0.69 | 0.222737 |
Target: 5'- ---cGaGGCGGaCCCGGCCuuCCCACCg -3' miRNA: 3'- cagaC-CCGCCgGGGCCGGccGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 963 | 0.66 | 0.343978 |
Target: 5'- -aCUGcGcCGGCaCCCgGGCCGGCggggcuuCCGCCg -3' miRNA: 3'- caGACcC-GCCG-GGG-CCGGCCG-------GGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 1094 | 0.69 | 0.217721 |
Target: 5'- ---cGGGCgccgcGGCCgCGGgCGGCgCCGCCg -3' miRNA: 3'- cagaCCCG-----CCGGgGCCgGCCG-GGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 2240 | 0.67 | 0.323005 |
Target: 5'- -gCUGGGCGcgggcgugugguaGuCCCCGGgCGGCacgcggcggaagCCGCCg -3' miRNA: 3'- caGACCCGC-------------C-GGGGCCgGCCG------------GGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 2340 | 0.72 | 0.136178 |
Target: 5'- ---aGcGGCGGCuCCCGccgcGCCGGCCCgGCCg -3' miRNA: 3'- cagaC-CCGCCG-GGGC----CGGCCGGG-UGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 2371 | 0.66 | 0.35191 |
Target: 5'- cGUCggcgGcGGCGGCUuuucgCCGGCgccuCGGCCCAg- -3' miRNA: 3'- -CAGa---C-CCGCCGG-----GGCCG----GCCGGGUgg -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 2583 | 0.69 | 0.212316 |
Target: 5'- -cCUGcGCGGCCgCCgcGGCCGcacgcgaGCCCGCCg -3' miRNA: 3'- caGACcCGCCGG-GG--CCGGC-------CGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 2759 | 0.67 | 0.310224 |
Target: 5'- ---cGcGGCGGCgCCGgcGCCGGCgcccCCGCCg -3' miRNA: 3'- cagaC-CCGCCGgGGC--CGGCCG----GGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 3084 | 0.71 | 0.168689 |
Target: 5'- cGUCcGGcGCgcaGGCCgCGGCCggcaggccgcGGCCCGCCg -3' miRNA: 3'- -CAGaCC-CG---CCGGgGCCGG----------CCGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 3147 | 0.66 | 0.365912 |
Target: 5'- ----cGGCGGCgCCGGCggcgcggCGGgCCGCCu -3' miRNA: 3'- cagacCCGCCGgGGCCG-------GCCgGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 3537 | 0.67 | 0.330583 |
Target: 5'- -----uGUGGCCCCGGCa-GCCCugCa -3' miRNA: 3'- cagaccCGCCGGGGCCGgcCGGGugG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 3992 | 0.67 | 0.323689 |
Target: 5'- ---cGGGCgcgcGGCCCCGcggggcGCCGggcccggcGCCCGCCu -3' miRNA: 3'- cagaCCCG----CCGGGGC------CGGC--------CGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 4052 | 0.68 | 0.254926 |
Target: 5'- uUCUGGuccCGGCCCCaGucCCGGCCUcaGCCu -3' miRNA: 3'- cAGACCc--GCCGGGGcC--GGCCGGG--UGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 4217 | 0.67 | 0.316902 |
Target: 5'- cGUCgccGGCcucGGUCCUGGCCccgagGGCaCCGCCg -3' miRNA: 3'- -CAGac-CCG---CCGGGGCCGG-----CCG-GGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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