miRNA display CGI


Results 1 - 20 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6688 5' -68.2 NC_001847.1 + 100837 0.84 0.019636
Target:  5'- ---cGGGCGGCUCCGGCCagggccggagcgccGGCCCGCCg -3'
miRNA:   3'- cagaCCCGCCGGGGCCGG--------------CCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 71075 0.73 0.120703
Target:  5'- -gCU-GGCGGCgCUCGGCCGGCgCgGCCa -3'
miRNA:   3'- caGAcCCGCCG-GGGCCGGCCG-GgUGG- -5'
6688 5' -68.2 NC_001847.1 + 134912 0.73 0.117811
Target:  5'- cGUCgGGGCgcgaGGCCCgGGCUcgGGCCC-CCg -3'
miRNA:   3'- -CAGaCCCG----CCGGGgCCGG--CCGGGuGG- -5'
6688 5' -68.2 NC_001847.1 + 54589 0.73 0.117811
Target:  5'- -gCUGGGCGGCgCUGGCgGcGCgCGCCc -3'
miRNA:   3'- caGACCCGCCGgGGCCGgC-CGgGUGG- -5'
6688 5' -68.2 NC_001847.1 + 15407 0.73 0.117811
Target:  5'- -gCUGGGCGGCCCUGGagcgCGGCaCgGCg -3'
miRNA:   3'- caGACCCGCCGGGGCCg---GCCG-GgUGg -5'
6688 5' -68.2 NC_001847.1 + 26495 0.73 0.113317
Target:  5'- cGUCc--GCGGCCCCGGCCacuucugcagcgucGCCCGCCg -3'
miRNA:   3'- -CAGaccCGCCGGGGCCGGc-------------CGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 22373 0.73 0.113317
Target:  5'- -aCUGGGacgaGGCCCCcgcggGGCCGGggucgcgacggacaaCCCGCCa -3'
miRNA:   3'- caGACCCg---CCGGGG-----CCGGCC---------------GGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 45844 0.74 0.106877
Target:  5'- -gCUGGGCGGCa-CGGCCgaGGCCUcgGCCg -3'
miRNA:   3'- caGACCCGCCGggGCCGG--CCGGG--UGG- -5'
6688 5' -68.2 NC_001847.1 + 11519 0.74 0.106877
Target:  5'- ---aGGGCGccGCCCCGGCCGaGUuuGCCg -3'
miRNA:   3'- cagaCCCGC--CGGGGCCGGC-CGggUGG- -5'
6688 5' -68.2 NC_001847.1 + 25320 0.74 0.099309
Target:  5'- ---aGGGCGcGCCCaaaGGCCGGCUC-CCg -3'
miRNA:   3'- cagaCCCGC-CGGGg--CCGGCCGGGuGG- -5'
6688 5' -68.2 NC_001847.1 + 103710 0.74 0.096901
Target:  5'- ---gGGGCcgccgcGGCCgCCGGCCGccGCCCGCCg -3'
miRNA:   3'- cagaCCCG------CCGG-GGCCGGC--CGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 44267 0.77 0.063081
Target:  5'- -aCUGGGCaacGGCCCCGGCCucgacaccagccccGGCCCcggggcGCCg -3'
miRNA:   3'- caGACCCG---CCGGGGCCGG--------------CCGGG------UGG- -5'
6688 5' -68.2 NC_001847.1 + 52672 0.77 0.060452
Target:  5'- ----cGGCGGCCCCguggccggGGCCgGGCCCGCCg -3'
miRNA:   3'- cagacCCGCCGGGG--------CCGG-CCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 37594 0.78 0.054677
Target:  5'- -gCUGcGGCGGCCgggGGCCGGCCCGCg -3'
miRNA:   3'- caGAC-CCGCCGGgg-CCGGCCGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 11662 0.78 0.053319
Target:  5'- -cUUGcGGCGGCCCCaGCCGaGCCCGCg -3'
miRNA:   3'- caGAC-CCGCCGGGGcCGGC-CGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 77472 0.79 0.041425
Target:  5'- ---cGGGCgccgGGCgCCCGGcCCGGCCCGCCg -3'
miRNA:   3'- cagaCCCG----CCG-GGGCC-GGCCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 64052 0.8 0.037431
Target:  5'- -cCUGGGCGcuggacGCCCUGGCCGGCCgccuCGCCg -3'
miRNA:   3'- caGACCCGC------CGGGGCCGGCCGG----GUGG- -5'
6688 5' -68.2 NC_001847.1 + 56857 0.8 0.036493
Target:  5'- cGUCUGcgcccGGCGGCCCgggcgCGGCCacgGGCCCGCCg -3'
miRNA:   3'- -CAGAC-----CCGCCGGG-----GCCGG---CCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 134260 0.81 0.032139
Target:  5'- ---cGcGGCGGCCCCGGCgCGGgCCGCCg -3'
miRNA:   3'- cagaC-CCGCCGGGGCCG-GCCgGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 129462 1.09 0.000222
Target:  5'- gGUCUGGGCGGCCCCGGCCGGCCCACCu -3'
miRNA:   3'- -CAGACCCGCCGGGGCCGGCCGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.