miRNA display CGI


Results 21 - 40 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6688 5' -68.2 NC_001847.1 + 68801 0.66 0.374193
Target:  5'- aUCgccacGGCGGCgCCCGcGCCccaCCCGCCg -3'
miRNA:   3'- cAGac---CCGCCG-GGGC-CGGcc-GGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 101911 0.66 0.35191
Target:  5'- ---aGGcgccGCGGCgCCCGGCgCGGCgCCaaGCCg -3'
miRNA:   3'- cagaCC----CGCCG-GGGCCG-GCCG-GG--UGG- -5'
6688 5' -68.2 NC_001847.1 + 26991 0.66 0.35191
Target:  5'- ---cGGcCGGCUagccagcuccgaCCGGCCGGCCUucuGCCa -3'
miRNA:   3'- cagaCCcGCCGG------------GGCCGGCCGGG---UGG- -5'
6688 5' -68.2 NC_001847.1 + 93960 0.66 0.36442
Target:  5'- uUCUGGGCGcccucuuaacacgcGCgCCCGcGCCGcgcGCUCACUc -3'
miRNA:   3'- cAGACCCGC--------------CG-GGGC-CGGC---CGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 47769 0.66 0.36666
Target:  5'- uGUCcgcgaaGGCGGCCacggccgggugcUCGGCCaGGCCCucgGCCg -3'
miRNA:   3'- -CAGac----CCGCCGG------------GGCCGG-CCGGG---UGG- -5'
6688 5' -68.2 NC_001847.1 + 29461 0.66 0.344694
Target:  5'- ---cGcGGCGGCCCgCGcGUCGGCCUgggcGCUg -3'
miRNA:   3'- cagaC-CCGCCGGG-GC-CGGCCGGG----UGG- -5'
6688 5' -68.2 NC_001847.1 + 2371 0.66 0.35191
Target:  5'- cGUCggcgGcGGCGGCUuuucgCCGGCgccuCGGCCCAg- -3'
miRNA:   3'- -CAGa---C-CCGCCGG-----GGCCG----GCCGGGUgg -5'
6688 5' -68.2 NC_001847.1 + 6365 0.66 0.374193
Target:  5'- gGUCUGaccgcccGCGGCCCCcuUUGGCCCuaGCCg -3'
miRNA:   3'- -CAGACc------CGCCGGGGccGGCCGGG--UGG- -5'
6688 5' -68.2 NC_001847.1 + 76302 0.66 0.359232
Target:  5'- ---aGGuGCGGgCCCGGCCcaaguGCCgACCc -3'
miRNA:   3'- cagaCC-CGCCgGGGCCGGc----CGGgUGG- -5'
6688 5' -68.2 NC_001847.1 + 10570 0.66 0.359232
Target:  5'- ---cGGGCccGGCgCCGG-CGGCCCcCCc -3'
miRNA:   3'- cagaCCCG--CCGgGGCCgGCCGGGuGG- -5'
6688 5' -68.2 NC_001847.1 + 35388 0.66 0.374193
Target:  5'- ---cGcGGCGGCUCacugccgGGCCGGCCaacgCACCc -3'
miRNA:   3'- cagaC-CCGCCGGGg------CCGGCCGG----GUGG- -5'
6688 5' -68.2 NC_001847.1 + 50354 0.66 0.374193
Target:  5'- ---aGGGUaaagcuGGCgCUGGCCGGCgUCGCCc -3'
miRNA:   3'- cagaCCCG------CCGgGGCCGGCCG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 963 0.66 0.343978
Target:  5'- -aCUGcGcCGGCaCCCgGGCCGGCggggcuuCCGCCg -3'
miRNA:   3'- caGACcC-GCCG-GGG-CCGGCCG-------GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 17669 0.66 0.344694
Target:  5'- cGUC--GGCGGCUCgCGGUCcgccgGGCaCCACCg -3'
miRNA:   3'- -CAGacCCGCCGGG-GCCGG-----CCG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 30400 0.66 0.35191
Target:  5'- ----cGGCGGCCCgagUGGCCG-CCgCGCCg -3'
miRNA:   3'- cagacCCGCCGGG---GCCGGCcGG-GUGG- -5'
6688 5' -68.2 NC_001847.1 + 84870 0.66 0.36666
Target:  5'- -gCUaGGCGGCCCaCGuaCGcGCCCAgCg -3'
miRNA:   3'- caGAcCCGCCGGG-GCcgGC-CGGGUgG- -5'
6688 5' -68.2 NC_001847.1 + 27971 0.66 0.36666
Target:  5'- gGUCgcggugGaGGCGGCCgCGGCCGGggcggaggCgGCCg -3'
miRNA:   3'- -CAGa-----C-CCGCCGGgGCCGGCCg-------GgUGG- -5'
6688 5' -68.2 NC_001847.1 + 80613 0.66 0.374193
Target:  5'- cGUCU--GCGcCCCCGGaCGGCcCCGCCc -3'
miRNA:   3'- -CAGAccCGCcGGGGCCgGCCG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 31355 0.66 0.359232
Target:  5'- ---gGcGGCGgaaGCCCC-GCCGGCCCggguGCCg -3'
miRNA:   3'- cagaC-CCGC---CGGGGcCGGCCGGG----UGG- -5'
6688 5' -68.2 NC_001847.1 + 32692 0.66 0.359232
Target:  5'- -gCUGGaGgGGCgCCCGaCCuGCCCGCUg -3'
miRNA:   3'- caGACC-CgCCG-GGGCcGGcCGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.