Results 21 - 40 of 391 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 68801 | 0.66 | 0.374193 |
Target: 5'- aUCgccacGGCGGCgCCCGcGCCccaCCCGCCg -3' miRNA: 3'- cAGac---CCGCCG-GGGC-CGGcc-GGGUGG- -5' |
|||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 101911 | 0.66 | 0.35191 |
Target: 5'- ---aGGcgccGCGGCgCCCGGCgCGGCgCCaaGCCg -3' miRNA: 3'- cagaCC----CGCCG-GGGCCG-GCCG-GG--UGG- -5' |
|||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 26991 | 0.66 | 0.35191 |
Target: 5'- ---cGGcCGGCUagccagcuccgaCCGGCCGGCCUucuGCCa -3' miRNA: 3'- cagaCCcGCCGG------------GGCCGGCCGGG---UGG- -5' |
|||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 93960 | 0.66 | 0.36442 |
Target: 5'- uUCUGGGCGcccucuuaacacgcGCgCCCGcGCCGcgcGCUCACUc -3' miRNA: 3'- cAGACCCGC--------------CG-GGGC-CGGC---CGGGUGG- -5' |
|||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 47769 | 0.66 | 0.36666 |
Target: 5'- uGUCcgcgaaGGCGGCCacggccgggugcUCGGCCaGGCCCucgGCCg -3' miRNA: 3'- -CAGac----CCGCCGG------------GGCCGG-CCGGG---UGG- -5' |
|||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 29461 | 0.66 | 0.344694 |
Target: 5'- ---cGcGGCGGCCCgCGcGUCGGCCUgggcGCUg -3' miRNA: 3'- cagaC-CCGCCGGG-GC-CGGCCGGG----UGG- -5' |
|||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 2371 | 0.66 | 0.35191 |
Target: 5'- cGUCggcgGcGGCGGCUuuucgCCGGCgccuCGGCCCAg- -3' miRNA: 3'- -CAGa---C-CCGCCGG-----GGCCG----GCCGGGUgg -5' |
|||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 6365 | 0.66 | 0.374193 |
Target: 5'- gGUCUGaccgcccGCGGCCCCcuUUGGCCCuaGCCg -3' miRNA: 3'- -CAGACc------CGCCGGGGccGGCCGGG--UGG- -5' |
|||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 76302 | 0.66 | 0.359232 |
Target: 5'- ---aGGuGCGGgCCCGGCCcaaguGCCgACCc -3' miRNA: 3'- cagaCC-CGCCgGGGCCGGc----CGGgUGG- -5' |
|||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 10570 | 0.66 | 0.359232 |
Target: 5'- ---cGGGCccGGCgCCGG-CGGCCCcCCc -3' miRNA: 3'- cagaCCCG--CCGgGGCCgGCCGGGuGG- -5' |
|||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 35388 | 0.66 | 0.374193 |
Target: 5'- ---cGcGGCGGCUCacugccgGGCCGGCCaacgCACCc -3' miRNA: 3'- cagaC-CCGCCGGGg------CCGGCCGG----GUGG- -5' |
|||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 50354 | 0.66 | 0.374193 |
Target: 5'- ---aGGGUaaagcuGGCgCUGGCCGGCgUCGCCc -3' miRNA: 3'- cagaCCCG------CCGgGGCCGGCCG-GGUGG- -5' |
|||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 963 | 0.66 | 0.343978 |
Target: 5'- -aCUGcGcCGGCaCCCgGGCCGGCggggcuuCCGCCg -3' miRNA: 3'- caGACcC-GCCG-GGG-CCGGCCG-------GGUGG- -5' |
|||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 17669 | 0.66 | 0.344694 |
Target: 5'- cGUC--GGCGGCUCgCGGUCcgccgGGCaCCACCg -3' miRNA: 3'- -CAGacCCGCCGGG-GCCGG-----CCG-GGUGG- -5' |
|||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 30400 | 0.66 | 0.35191 |
Target: 5'- ----cGGCGGCCCgagUGGCCG-CCgCGCCg -3' miRNA: 3'- cagacCCGCCGGG---GCCGGCcGG-GUGG- -5' |
|||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 84870 | 0.66 | 0.36666 |
Target: 5'- -gCUaGGCGGCCCaCGuaCGcGCCCAgCg -3' miRNA: 3'- caGAcCCGCCGGG-GCcgGC-CGGGUgG- -5' |
|||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 27971 | 0.66 | 0.36666 |
Target: 5'- gGUCgcggugGaGGCGGCCgCGGCCGGggcggaggCgGCCg -3' miRNA: 3'- -CAGa-----C-CCGCCGGgGCCGGCCg-------GgUGG- -5' |
|||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 80613 | 0.66 | 0.374193 |
Target: 5'- cGUCU--GCGcCCCCGGaCGGCcCCGCCc -3' miRNA: 3'- -CAGAccCGCcGGGGCCgGCCG-GGUGG- -5' |
|||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 31355 | 0.66 | 0.359232 |
Target: 5'- ---gGcGGCGgaaGCCCC-GCCGGCCCggguGCCg -3' miRNA: 3'- cagaC-CCGC---CGGGGcCGGCCGGG----UGG- -5' |
|||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 32692 | 0.66 | 0.359232 |
Target: 5'- -gCUGGaGgGGCgCCCGaCCuGCCCGCUg -3' miRNA: 3'- caGACC-CgCCG-GGGCcGGcCGGGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home