Results 41 - 60 of 391 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 35388 | 0.66 | 0.374193 |
Target: 5'- ---cGcGGCGGCUCacugccgGGCCGGCCaacgCACCc -3' miRNA: 3'- cagaC-CCGCCGGGg------CCGGCCGG----GUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 963 | 0.66 | 0.343978 |
Target: 5'- -aCUGcGcCGGCaCCCgGGCCGGCggggcuuCCGCCg -3' miRNA: 3'- caGACcC-GCCG-GGG-CCGGCCG-------GGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 117019 | 0.67 | 0.316902 |
Target: 5'- -cCUGGGCGcuccuGUcugCCCGGCgggGGCUCGCCg -3' miRNA: 3'- caGACCCGC-----CG---GGGCCGg--CCGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 3992 | 0.67 | 0.323689 |
Target: 5'- ---cGGGCgcgcGGCCCCGcggggcGCCGggcccggcGCCCGCCu -3' miRNA: 3'- cagaCCCG----CCGGGGC------CGGC--------CGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 17669 | 0.66 | 0.344694 |
Target: 5'- cGUC--GGCGGCUCgCGGUCcgccgGGCaCCACCg -3' miRNA: 3'- -CAGacCCGCCGGG-GCCGG-----CCG-GGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 84870 | 0.66 | 0.36666 |
Target: 5'- -gCUaGGCGGCCCaCGuaCGcGCCCAgCg -3' miRNA: 3'- caGAcCCGCCGGG-GCcgGC-CGGGUgG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 50354 | 0.66 | 0.374193 |
Target: 5'- ---aGGGUaaagcuGGCgCUGGCCGGCgUCGCCc -3' miRNA: 3'- cagaCCCG------CCGgGGCCGGCCG-GGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 80613 | 0.66 | 0.374193 |
Target: 5'- cGUCU--GCGcCCCCGGaCGGCcCCGCCc -3' miRNA: 3'- -CAGAccCGCcGGGGCCgGCCG-GGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 31355 | 0.66 | 0.359232 |
Target: 5'- ---gGcGGCGgaaGCCCC-GCCGGCCCggguGCCg -3' miRNA: 3'- cagaC-CCGC---CGGGGcCGGCCGGG----UGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 101911 | 0.66 | 0.35191 |
Target: 5'- ---aGGcgccGCGGCgCCCGGCgCGGCgCCaaGCCg -3' miRNA: 3'- cagaCC----CGCCG-GGGCCG-GCCG-GG--UGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 30400 | 0.66 | 0.35191 |
Target: 5'- ----cGGCGGCCCgagUGGCCG-CCgCGCCg -3' miRNA: 3'- cagacCCGCCGGG---GCCGGCcGG-GUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 131720 | 0.66 | 0.365912 |
Target: 5'- -cCUGGGCugcgccuGGCCCCccgGGCUGcucuCCCGCUg -3' miRNA: 3'- caGACCCG-------CCGGGG---CCGGCc---GGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 122411 | 0.66 | 0.373435 |
Target: 5'- -gCUGGGCcGCaCCCGGCCcuccaaaauccugGGCagcggCACCu -3' miRNA: 3'- caGACCCGcCG-GGGCCGG-------------CCGg----GUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 42008 | 0.67 | 0.330583 |
Target: 5'- ---cGGGgGGCgCCGGCa-GCCCgGCCa -3' miRNA: 3'- cagaCCCgCCGgGGCCGgcCGGG-UGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 85660 | 0.66 | 0.337585 |
Target: 5'- gGUUUGGcGCGGCCgugCUGGCgCGcaggcGCUCGCCg -3' miRNA: 3'- -CAGACC-CGCCGG---GGCCG-GC-----CGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 31072 | 0.66 | 0.344694 |
Target: 5'- -gCUGGG-GGCUCggcgcgccgcugCGGCCGGUgUACCu -3' miRNA: 3'- caGACCCgCCGGG------------GCCGGCCGgGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 59211 | 0.67 | 0.323689 |
Target: 5'- --gUGuGGCGGCgCaCGG-CGGCgCCACCg -3' miRNA: 3'- cagAC-CCGCCGgG-GCCgGCCG-GGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 26649 | 1.09 | 0.000222 |
Target: 5'- gGUCUGGGCGGCCCCGGCCGGCCCACCu -3' miRNA: 3'- -CAGACCCGCCGGGGCCGGCCGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 83464 | 0.67 | 0.316902 |
Target: 5'- -gUUGGGCgucgGGCuCCCGGgCGGCUUcCCg -3' miRNA: 3'- caGACCCG----CCG-GGGCCgGCCGGGuGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 29297 | 0.67 | 0.329888 |
Target: 5'- cUCcGGGCcGCCgagcugcUCGGCgCGGCCCGCg -3' miRNA: 3'- cAGaCCCGcCGG-------GGCCG-GCCGGGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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