miRNA display CGI


Results 41 - 60 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6688 5' -68.2 NC_001847.1 + 35388 0.66 0.374193
Target:  5'- ---cGcGGCGGCUCacugccgGGCCGGCCaacgCACCc -3'
miRNA:   3'- cagaC-CCGCCGGGg------CCGGCCGG----GUGG- -5'
6688 5' -68.2 NC_001847.1 + 963 0.66 0.343978
Target:  5'- -aCUGcGcCGGCaCCCgGGCCGGCggggcuuCCGCCg -3'
miRNA:   3'- caGACcC-GCCG-GGG-CCGGCCG-------GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 117019 0.67 0.316902
Target:  5'- -cCUGGGCGcuccuGUcugCCCGGCgggGGCUCGCCg -3'
miRNA:   3'- caGACCCGC-----CG---GGGCCGg--CCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 3992 0.67 0.323689
Target:  5'- ---cGGGCgcgcGGCCCCGcggggcGCCGggcccggcGCCCGCCu -3'
miRNA:   3'- cagaCCCG----CCGGGGC------CGGC--------CGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 17669 0.66 0.344694
Target:  5'- cGUC--GGCGGCUCgCGGUCcgccgGGCaCCACCg -3'
miRNA:   3'- -CAGacCCGCCGGG-GCCGG-----CCG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 84870 0.66 0.36666
Target:  5'- -gCUaGGCGGCCCaCGuaCGcGCCCAgCg -3'
miRNA:   3'- caGAcCCGCCGGG-GCcgGC-CGGGUgG- -5'
6688 5' -68.2 NC_001847.1 + 50354 0.66 0.374193
Target:  5'- ---aGGGUaaagcuGGCgCUGGCCGGCgUCGCCc -3'
miRNA:   3'- cagaCCCG------CCGgGGCCGGCCG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 80613 0.66 0.374193
Target:  5'- cGUCU--GCGcCCCCGGaCGGCcCCGCCc -3'
miRNA:   3'- -CAGAccCGCcGGGGCCgGCCG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 31355 0.66 0.359232
Target:  5'- ---gGcGGCGgaaGCCCC-GCCGGCCCggguGCCg -3'
miRNA:   3'- cagaC-CCGC---CGGGGcCGGCCGGG----UGG- -5'
6688 5' -68.2 NC_001847.1 + 101911 0.66 0.35191
Target:  5'- ---aGGcgccGCGGCgCCCGGCgCGGCgCCaaGCCg -3'
miRNA:   3'- cagaCC----CGCCG-GGGCCG-GCCG-GG--UGG- -5'
6688 5' -68.2 NC_001847.1 + 30400 0.66 0.35191
Target:  5'- ----cGGCGGCCCgagUGGCCG-CCgCGCCg -3'
miRNA:   3'- cagacCCGCCGGG---GCCGGCcGG-GUGG- -5'
6688 5' -68.2 NC_001847.1 + 131720 0.66 0.365912
Target:  5'- -cCUGGGCugcgccuGGCCCCccgGGCUGcucuCCCGCUg -3'
miRNA:   3'- caGACCCG-------CCGGGG---CCGGCc---GGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 122411 0.66 0.373435
Target:  5'- -gCUGGGCcGCaCCCGGCCcuccaaaauccugGGCagcggCACCu -3'
miRNA:   3'- caGACCCGcCG-GGGCCGG-------------CCGg----GUGG- -5'
6688 5' -68.2 NC_001847.1 + 42008 0.67 0.330583
Target:  5'- ---cGGGgGGCgCCGGCa-GCCCgGCCa -3'
miRNA:   3'- cagaCCCgCCGgGGCCGgcCGGG-UGG- -5'
6688 5' -68.2 NC_001847.1 + 85660 0.66 0.337585
Target:  5'- gGUUUGGcGCGGCCgugCUGGCgCGcaggcGCUCGCCg -3'
miRNA:   3'- -CAGACC-CGCCGG---GGCCG-GC-----CGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 31072 0.66 0.344694
Target:  5'- -gCUGGG-GGCUCggcgcgccgcugCGGCCGGUgUACCu -3'
miRNA:   3'- caGACCCgCCGGG------------GCCGGCCGgGUGG- -5'
6688 5' -68.2 NC_001847.1 + 59211 0.67 0.323689
Target:  5'- --gUGuGGCGGCgCaCGG-CGGCgCCACCg -3'
miRNA:   3'- cagAC-CCGCCGgG-GCCgGCCG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 26649 1.09 0.000222
Target:  5'- gGUCUGGGCGGCCCCGGCCGGCCCACCu -3'
miRNA:   3'- -CAGACCCGCCGGGGCCGGCCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 83464 0.67 0.316902
Target:  5'- -gUUGGGCgucgGGCuCCCGGgCGGCUUcCCg -3'
miRNA:   3'- caGACCCG----CCG-GGGCCgGCCGGGuGG- -5'
6688 5' -68.2 NC_001847.1 + 29297 0.67 0.329888
Target:  5'- cUCcGGGCcGCCgagcugcUCGGCgCGGCCCGCg -3'
miRNA:   3'- cAGaCCCGcCGG-------GGCCG-GCCGGGUGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.