miRNA display CGI


Results 41 - 60 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6688 5' -68.2 NC_001847.1 + 21375 0.66 0.36666
Target:  5'- ---cGGGCcGCCUCGGgCGGCUCGUCa -3'
miRNA:   3'- cagaCCCGcCGGGGCCgGCCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 18668 0.66 0.367409
Target:  5'- ---cGGGagugcagguacgcgaGGCCCCGcaGCaCGGCCCGCg -3'
miRNA:   3'- cagaCCCg--------------CCGGGGC--CG-GCCGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 105960 0.66 0.365912
Target:  5'- ----cGGCGGCgCCGGCggcgcggCGGgCCGCCu -3'
miRNA:   3'- cagacCCGCCGgGGCCG-------GCCgGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 6365 0.66 0.374193
Target:  5'- gGUCUGaccgcccGCGGCCCCcuUUGGCCCuaGCCg -3'
miRNA:   3'- -CAGACc------CGCCGGGGccGGCCGGG--UGG- -5'
6688 5' -68.2 NC_001847.1 + 123825 0.66 0.374193
Target:  5'- cGUCcuGGCGuuggagguaguGCCCCGGCCcugaGGCCCcgagACCc -3'
miRNA:   3'- -CAGacCCGC-----------CGGGGCCGG----CCGGG----UGG- -5'
6688 5' -68.2 NC_001847.1 + 81529 0.66 0.374193
Target:  5'- aGUCUGcgcauccguucGGCGGCCgagCUcGCCGGcCCCGCg -3'
miRNA:   3'- -CAGAC-----------CCGCCGG---GGcCGGCC-GGGUGg -5'
6688 5' -68.2 NC_001847.1 + 12936 0.66 0.35191
Target:  5'- ---aGGGCacccGGCCCCGGCuaguguggCGGCgCGCg -3'
miRNA:   3'- cagaCCCG----CCGGGGCCG--------GCCGgGUGg -5'
6688 5' -68.2 NC_001847.1 + 86611 0.66 0.36666
Target:  5'- cUCcGGGCGcGCCUCGaGgCGGgCCACa -3'
miRNA:   3'- cAGaCCCGC-CGGGGC-CgGCCgGGUGg -5'
6688 5' -68.2 NC_001847.1 + 96576 0.66 0.374193
Target:  5'- -cCUccGCGGCUCCGGCagcaGGCgCUGCCa -3'
miRNA:   3'- caGAccCGCCGGGGCCGg---CCG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 127088 0.66 0.374193
Target:  5'- cUCUGcGcGCgGGCCgCgCGGCUuugGGUCCACCg -3'
miRNA:   3'- cAGAC-C-CG-CCGG-G-GCCGG---CCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 127272 0.66 0.36666
Target:  5'- gGUCU-GGCGGCCCaaa-CGGCCCGa- -3'
miRNA:   3'- -CAGAcCCGCCGGGgccgGCCGGGUgg -5'
6688 5' -68.2 NC_001847.1 + 120182 0.66 0.374193
Target:  5'- cUCUGgauGGUGGUgCUGGCCGcgcgagcggcGCCCGCUc -3'
miRNA:   3'- cAGAC---CCGCCGgGGCCGGC----------CGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 100622 0.66 0.36666
Target:  5'- ---cGGGCGGCgCaucGCCGGCgCCGuCCg -3'
miRNA:   3'- cagaCCCGCCGgGgc-CGGCCG-GGU-GG- -5'
6688 5' -68.2 NC_001847.1 + 47769 0.66 0.36666
Target:  5'- uGUCcgcgaaGGCGGCCacggccgggugcUCGGCCaGGCCCucgGCCg -3'
miRNA:   3'- -CAGac----CCGCCGG------------GGCCGG-CCGGG---UGG- -5'
6688 5' -68.2 NC_001847.1 + 35388 0.66 0.374193
Target:  5'- ---cGcGGCGGCUCacugccgGGCCGGCCaacgCACCc -3'
miRNA:   3'- cagaC-CCGCCGGGg------CCGGCCGG----GUGG- -5'
6688 5' -68.2 NC_001847.1 + 32285 0.66 0.359232
Target:  5'- cGUCcgcgUGGcGCGGCCCCGcgacGCCgccgcggaacgGGaCCCGCUg -3'
miRNA:   3'- -CAG----ACC-CGCCGGGGC----CGG-----------CC-GGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 96997 0.66 0.36442
Target:  5'- cUCgGGGCGGCgcgccgcgcgaagaCUCGGugcCCGGCgCACCc -3'
miRNA:   3'- cAGaCCCGCCG--------------GGGCC---GGCCGgGUGG- -5'
6688 5' -68.2 NC_001847.1 + 58685 0.66 0.36442
Target:  5'- ---cGGGCGGCa--GGCUGGCcauggcgcuggcauCCACCg -3'
miRNA:   3'- cagaCCCGCCGgggCCGGCCG--------------GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 93793 0.66 0.359232
Target:  5'- -gCUGGuuccgcGCGGCCgCgCGGCCGaGUCC-CCg -3'
miRNA:   3'- caGACC------CGCCGG-G-GCCGGC-CGGGuGG- -5'
6688 5' -68.2 NC_001847.1 + 105184 0.66 0.35191
Target:  5'- cGUCggcgGcGGCGGCUuuucgCCGGCgccuCGGCCCAg- -3'
miRNA:   3'- -CAGa---C-CCGCCGG-----GGCCG----GCCGGGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.