Results 61 - 80 of 391 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 105184 | 0.66 | 0.35191 |
Target: 5'- cGUCggcgGcGGCGGCUuuucgCCGGCgccuCGGCCCAg- -3' miRNA: 3'- -CAGa---C-CCGCCGG-----GGCCG----GCCGGGUgg -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 105960 | 0.66 | 0.365912 |
Target: 5'- ----cGGCGGCgCCGGCggcgcggCGGgCCGCCu -3' miRNA: 3'- cagacCCGCCGgGGCCG-------GCCgGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 58299 | 0.66 | 0.36666 |
Target: 5'- -aCgGcGGCGGCCggcaGGCCGGCauggCGCCg -3' miRNA: 3'- caGaC-CCGCCGGgg--CCGGCCGg---GUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 24459 | 0.66 | 0.36666 |
Target: 5'- gGUCU-GGCGGCCCaaa-CGGCCCGa- -3' miRNA: 3'- -CAGAcCCGCCGGGgccgGCCGGGUgg -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 86611 | 0.66 | 0.36666 |
Target: 5'- cUCcGGGCGcGCCUCGaGgCGGgCCACa -3' miRNA: 3'- cAGaCCCGC-CGGGGC-CgGCCgGGUGg -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 87661 | 0.66 | 0.358495 |
Target: 5'- uGUUUGGGCugcgccgcauGGCCCgGGCgcuggggcugcugCGGCgCCGCg -3' miRNA: 3'- -CAGACCCG----------CCGGGgCCG-------------GCCG-GGUGg -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 58685 | 0.66 | 0.36442 |
Target: 5'- ---cGGGCGGCa--GGCUGGCcauggcgcuggcauCCACCg -3' miRNA: 3'- cagaCCCGCCGgggCCGGCCG--------------GGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 127272 | 0.66 | 0.36666 |
Target: 5'- gGUCU-GGCGGCCCaaa-CGGCCCGa- -3' miRNA: 3'- -CAGAcCCGCCGGGgccgGCCGGGUgg -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 21375 | 0.66 | 0.36666 |
Target: 5'- ---cGGGCcGCCUCGGgCGGCUCGUCa -3' miRNA: 3'- cagaCCCGcCGGGGCCgGCCGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 134168 | 0.66 | 0.359232 |
Target: 5'- ---gGcGGCGgaaGCCCC-GCCGGCCCggguGCCg -3' miRNA: 3'- cagaC-CCGC---CGGGGcCGGCCGGG----UGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 93793 | 0.66 | 0.359232 |
Target: 5'- -gCUGGuuccgcGCGGCCgCgCGGCCGaGUCC-CCg -3' miRNA: 3'- caGACC------CGCCGG-G-GCCGGC-CGGGuGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 4341 | 0.66 | 0.374193 |
Target: 5'- ---cGcGGCcgccuccGCCCCGGCCGcGgCCGCCu -3' miRNA: 3'- cagaC-CCGc------CGGGGCCGGC-CgGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 81529 | 0.66 | 0.374193 |
Target: 5'- aGUCUGcgcauccguucGGCGGCCgagCUcGCCGGcCCCGCg -3' miRNA: 3'- -CAGAC-----------CCGCCGG---GGcCGGCC-GGGUGg -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 120182 | 0.66 | 0.374193 |
Target: 5'- cUCUGgauGGUGGUgCUGGCCGcgcgagcggcGCCCGCUc -3' miRNA: 3'- cAGAC---CCGCCGgGGCCGGC----------CGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 68801 | 0.66 | 0.374193 |
Target: 5'- aUCgccacGGCGGCgCCCGcGCCccaCCCGCCg -3' miRNA: 3'- cAGac---CCGCCG-GGGC-CGGcc-GGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 26397 | 0.66 | 0.374193 |
Target: 5'- ---cGGGCGGgCCCGucguccGCCG-CCCAUCc -3' miRNA: 3'- cagaCCCGCCgGGGC------CGGCcGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 107154 | 0.66 | 0.374193 |
Target: 5'- ---cGcGGCcgccuccGCCCCGGCCGcGgCCGCCu -3' miRNA: 3'- cagaC-CCGc------CGGGGCCGGC-CgGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 61940 | 0.66 | 0.36666 |
Target: 5'- cGUCaGcGGCGGCgcggCCCGcGCgGGCCgACUc -3' miRNA: 3'- -CAGaC-CCGCCG----GGGC-CGgCCGGgUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 109178 | 0.66 | 0.374193 |
Target: 5'- gGUCUGaccgcccGCGGCCCCcuUUGGCCCuaGCCg -3' miRNA: 3'- -CAGACc------CGCCGGGGccGGCCGGG--UGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 58306 | 0.66 | 0.374193 |
Target: 5'- uGUUUGgcgcgcGGUGGCUCCGGCaccggucucugUGGCCCuCCc -3' miRNA: 3'- -CAGAC------CCGCCGGGGCCG-----------GCCGGGuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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