miRNA display CGI


Results 61 - 80 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6688 5' -68.2 NC_001847.1 + 111157 0.71 0.153458
Target:  5'- uUCUGGGacuGGCgCCaaGCCGGCCCAUg -3'
miRNA:   3'- cAGACCCg--CCG-GGgcCGGCCGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 113164 0.71 0.157145
Target:  5'- cGUCgaccgcGGGCGGCaaCCGGCgccgCGGCCCAgCg -3'
miRNA:   3'- -CAGa-----CCCGCCGg-GGCCG----GCCGGGUgG- -5'
6688 5' -68.2 NC_001847.1 + 14153 0.71 0.157145
Target:  5'- -cCUGGGCGGCCgcuagggcgaCGGCCGcGCUUACg -3'
miRNA:   3'- caGACCCGCCGGg---------GCCGGC-CGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 13129 0.71 0.157145
Target:  5'- ---cGGGCGGCgCCGcGCCG-CCUGCCg -3'
miRNA:   3'- cagaCCCGCCGgGGC-CGGCcGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 113507 0.71 0.160911
Target:  5'- gGUCgcgcccGGGCGcGgCCCGcGCCGGCCaagCGCCg -3'
miRNA:   3'- -CAGa-----CCCGC-CgGGGC-CGGCCGG---GUGG- -5'
6688 5' -68.2 NC_001847.1 + 10694 0.71 0.160911
Target:  5'- gGUCgcgcccGGGCGcGgCCCGcGCCGGCCaagCGCCg -3'
miRNA:   3'- -CAGa-----CCCGC-CgGGGC-CGGCCGG---GUGG- -5'
6688 5' -68.2 NC_001847.1 + 72041 0.71 0.16437
Target:  5'- ---gGcGGCGGCCCCGGggcguacCCGGuCCCGCa -3'
miRNA:   3'- cagaC-CCGCCGGGGCC-------GGCC-GGGUGg -5'
6688 5' -68.2 NC_001847.1 + 38716 0.71 0.168292
Target:  5'- cUCcgGGGCcgcgccugccgccGGCCCCGccauugccgccGCCGGCcCCGCCa -3'
miRNA:   3'- cAGa-CCCG-------------CCGGGGC-----------CGGCCG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 3084 0.71 0.168689
Target:  5'- cGUCcGGcGCgcaGGCCgCGGCCggcaggccgcGGCCCGCCg -3'
miRNA:   3'- -CAGaCC-CG---CCGGgGCCGG----------CCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 9624 0.71 0.168689
Target:  5'- -gCUGcGCccGCCgCCGcGCCGGCCCGCCg -3'
miRNA:   3'- caGACcCGc-CGG-GGC-CGGCCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 105897 0.71 0.168689
Target:  5'- cGUCcGGcGCgcaGGCCgCGGCCggcaggccgcGGCCCGCCg -3'
miRNA:   3'- -CAGaCC-CG---CCGGgGCCGG----------CCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 121209 0.71 0.17149
Target:  5'- ---gGGGCGGCCCCccugccgcGGCgCGGCaccgagcgccccagCCACCg -3'
miRNA:   3'- cagaCCCGCCGGGG--------CCG-GCCG--------------GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 15595 0.71 0.17149
Target:  5'- aGUCUGGccGCGcGCCCCuugcccagccugccGGCCGcGgCCGCCg -3'
miRNA:   3'- -CAGACC--CGC-CGGGG--------------CCGGC-CgGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 102131 0.71 0.17149
Target:  5'- ---aGGGCGGCggcacuccgcgcgaCCacggCGGCgCGGCCCGCCg -3'
miRNA:   3'- cagaCCCGCCG--------------GG----GCCG-GCCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 88916 0.71 0.172703
Target:  5'- -aCUGGuGCGagauuucCCCgCGGCCGGCCCGgCg -3'
miRNA:   3'- caGACC-CGCc------GGG-GCCGGCCGGGUgG- -5'
6688 5' -68.2 NC_001847.1 + 131986 0.71 0.172703
Target:  5'- -gCUGgaGGCGGCCcgCCGcgccGCCGGCgCCGCCg -3'
miRNA:   3'- caGAC--CCGCCGG--GGC----CGGCCG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 29173 0.71 0.172703
Target:  5'- -gCUGgaGGCGGCCcgCCGcgccGCCGGCgCCGCCg -3'
miRNA:   3'- caGAC--CCGCCGG--GGC----CGGCCG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 115036 0.71 0.175975
Target:  5'- aUCguaGGGCGGCCacgggcuagcgaUGGCCGGgCCgCGCCg -3'
miRNA:   3'- cAGa--CCCGCCGGg-----------GCCGGCC-GG-GUGG- -5'
6688 5' -68.2 NC_001847.1 + 66168 0.71 0.176802
Target:  5'- uGUCUcccGGGCuGGCgCCGGCCG-CCC-CCu -3'
miRNA:   3'- -CAGA---CCCG-CCGgGGCCGGCcGGGuGG- -5'
6688 5' -68.2 NC_001847.1 + 24947 0.7 0.180987
Target:  5'- -gCUGGGCGGCuugCCCGGCagguGGCgCAgCa -3'
miRNA:   3'- caGACCCGCCG---GGGCCGg---CCGgGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.