Results 61 - 80 of 391 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 52583 | 0.73 | 0.126687 |
Target: 5'- cUCgagGcGGCGGCCgaGGCCGaGCCCGCg -3' miRNA: 3'- cAGa--C-CCGCCGGggCCGGC-CGGGUGg -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 38716 | 0.71 | 0.168292 |
Target: 5'- cUCcgGGGCcgcgccugccgccGGCCCCGccauugccgccGCCGGCcCCGCCa -3' miRNA: 3'- cAGa-CCCG-------------CCGGGGC-----------CGGCCG-GGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 113507 | 0.71 | 0.160911 |
Target: 5'- gGUCgcgcccGGGCGcGgCCCGcGCCGGCCaagCGCCg -3' miRNA: 3'- -CAGa-----CCCGC-CgGGGC-CGGCCGG---GUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 13129 | 0.71 | 0.157145 |
Target: 5'- ---cGGGCGGCgCCGcGCCG-CCUGCCg -3' miRNA: 3'- cagaCCCGCCGgGGC-CGGCcGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 14153 | 0.71 | 0.157145 |
Target: 5'- -cCUGGGCGGCCgcuagggcgaCGGCCGcGCUUACg -3' miRNA: 3'- caGACCCGCCGGg---------GCCGGC-CGGGUGg -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 111157 | 0.71 | 0.153458 |
Target: 5'- uUCUGGGacuGGCgCCaaGCCGGCCCAUg -3' miRNA: 3'- cAGACCCg--CCG-GGgcCGGCCGGGUGg -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 17065 | 0.72 | 0.146319 |
Target: 5'- ---cGGGCGGUaaaCGGCCGGCgUGCCa -3' miRNA: 3'- cagaCCCGCCGgg-GCCGGCCGgGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 11583 | 0.72 | 0.146319 |
Target: 5'- ---cGcGGCGGCCCCGGCCcaaGCCCcguucgcagcgGCCu -3' miRNA: 3'- cagaC-CCGCCGGGGCCGGc--CGGG-----------UGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 125329 | 0.72 | 0.146319 |
Target: 5'- ---gGcGGCGGgCCgGGCCGGUCUGCCg -3' miRNA: 3'- cagaC-CCGCCgGGgCCGGCCGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 94063 | 0.72 | 0.146319 |
Target: 5'- -gCUGGGcCGGCaCCaguacguuugcgCGGCCaGCCCGCCc -3' miRNA: 3'- caGACCC-GCCG-GG------------GCCGGcCGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 103776 | 0.72 | 0.14597 |
Target: 5'- -aCUGcGcCGGCaCCCGGCCGGCggggcuuCCGCCg -3' miRNA: 3'- caGACcC-GCCG-GGGCCGGCCG-------GGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 103559 | 0.72 | 0.142865 |
Target: 5'- -----cGCgGGCCCCccuagggcgaGGCCGGCCCGCCg -3' miRNA: 3'- cagaccCG-CCGGGG----------CCGGCCGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 482 | 0.72 | 0.142865 |
Target: 5'- cGUCaUGGGUGcccgcGCCuCCGcgccugcuGCCGGCCCGCCc -3' miRNA: 3'- -CAG-ACCCGC-----CGG-GGC--------CGGCCGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 83615 | 0.72 | 0.139485 |
Target: 5'- -cCUGGGCGccGCCCCcgccuGCCGGCgCCGCa -3' miRNA: 3'- caGACCCGC--CGGGGc----CGGCCG-GGUGg -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 105153 | 0.72 | 0.136178 |
Target: 5'- ---aGcGGCGGCuCCCGccgcGCCGGCCCgGCCg -3' miRNA: 3'- cagaC-CCGCCG-GGGC----CGGCCGGG-UGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 102238 | 0.72 | 0.136178 |
Target: 5'- cGUCc--GCGGCCCCGgcuuccccGCCGGCCC-CCg -3' miRNA: 3'- -CAGaccCGCCGGGGC--------CGGCCGGGuGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 52458 | 0.72 | 0.1352 |
Target: 5'- -aCUGGGCGGCCCUGGUgGaggacgaguucuucGCCCAg- -3' miRNA: 3'- caGACCCGCCGGGGCCGgC--------------CGGGUgg -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 52745 | 0.72 | 0.132944 |
Target: 5'- --aUGGGC-GUCCCGGacaagCGGCCCGCCc -3' miRNA: 3'- cagACCCGcCGGGGCCg----GCCGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 132594 | 0.72 | 0.132944 |
Target: 5'- ---aGGGCcGCCCCGGcCCGGCggcgggagcgCCGCCg -3' miRNA: 3'- cagaCCCGcCGGGGCC-GGCCG----------GGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 16235 | 0.73 | 0.126687 |
Target: 5'- cGUCccGGccuCGGCCCCGGCCccGGCCCcgGCCc -3' miRNA: 3'- -CAGa-CCc--GCCGGGGCCGG--CCGGG--UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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