miRNA display CGI


Results 61 - 80 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6688 5' -68.2 NC_001847.1 + 18668 0.66 0.367409
Target:  5'- ---cGGGagugcagguacgcgaGGCCCCGcaGCaCGGCCCGCg -3'
miRNA:   3'- cagaCCCg--------------CCGGGGC--CG-GCCGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 18957 0.69 0.243791
Target:  5'- cGUCcGGGCGGCgacgaccagCgCGGCCGcggcGCCCGCg -3'
miRNA:   3'- -CAGaCCCGCCG---------GgGCCGGC----CGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 19865 0.68 0.272405
Target:  5'- ---cGGG-GGCgCCGGCUuaGCCCGCCa -3'
miRNA:   3'- cagaCCCgCCGgGGCCGGc-CGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 20028 0.7 0.194073
Target:  5'- ---aGGGCGGCCCugCGGCCG--CCGCCc -3'
miRNA:   3'- cagaCCCGCCGGG--GCCGGCcgGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 20076 0.7 0.198615
Target:  5'- ---cGuGGCGGCUCCcgcGGCgCGGCCCgGCCa -3'
miRNA:   3'- cagaC-CCGCCGGGG---CCG-GCCGGG-UGG- -5'
6688 5' -68.2 NC_001847.1 + 21375 0.66 0.36666
Target:  5'- ---cGGGCcGCCUCGGgCGGCUCGUCa -3'
miRNA:   3'- cagaCCCGcCGGGGCCgGCCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 21508 0.67 0.303653
Target:  5'- ---cGGGCGcGCCUCGGCgggGGCCgCGCg -3'
miRNA:   3'- cagaCCCGC-CGGGGCCGg--CCGG-GUGg -5'
6688 5' -68.2 NC_001847.1 + 21616 0.68 0.272405
Target:  5'- cUCgcuGGCGGCgCuuGGCCGGCgCggGCCg -3'
miRNA:   3'- cAGac-CCGCCG-GggCCGGCCGgG--UGG- -5'
6688 5' -68.2 NC_001847.1 + 21731 0.7 0.207979
Target:  5'- ---gGGcGCGGgCCgGcGCCGGCCCGCg -3'
miRNA:   3'- cagaCC-CGCCgGGgC-CGGCCGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 21761 0.69 0.238377
Target:  5'- ---gGGGgGGCCgCCGGCgccgGGCCCggcGCCg -3'
miRNA:   3'- cagaCCCgCCGG-GGCCGg---CCGGG---UGG- -5'
6688 5' -68.2 NC_001847.1 + 21877 0.66 0.337585
Target:  5'- -gCUGcGGCGcgcuGCCgaGGCCGaGCCCGCg -3'
miRNA:   3'- caGAC-CCGC----CGGggCCGGC-CGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 21967 0.68 0.266473
Target:  5'- -gCUGGGCcgcGGCgCCGGuuGccGCCCGCg -3'
miRNA:   3'- caGACCCG---CCGgGGCCggC--CGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 22373 0.73 0.113317
Target:  5'- -aCUGGGacgaGGCCCCcgcggGGCCGGggucgcgacggacaaCCCGCCa -3'
miRNA:   3'- caGACCCg---CCGGGG-----CCGGCC---------------GGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 22516 0.72 0.146319
Target:  5'- ---gGcGGCGGgCCgGGCCGGUCUGCCg -3'
miRNA:   3'- cagaC-CCGCCgGGgCCGGCCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 22581 0.7 0.18526
Target:  5'- ---cGGGC-GCCCCggGGCagGGCCCGCCc -3'
miRNA:   3'- cagaCCCGcCGGGG--CCGg-CCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 23700 0.69 0.222231
Target:  5'- uGUCUuugaguaGGGCGcuccuccccccGcCCCCGGCCGaGCgCCGCCc -3'
miRNA:   3'- -CAGA-------CCCGC-----------C-GGGGCCGGC-CG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 23842 0.69 0.217721
Target:  5'- cGUaagGGGCcccGcCCCCGGCCGaGCgCCGCCc -3'
miRNA:   3'- -CAga-CCCGc--C-GGGGCCGGC-CG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 23843 0.69 0.238377
Target:  5'- ---cGcaCGGCCCCGaGCCGGCUgGCCu -3'
miRNA:   3'- cagaCccGCCGGGGC-CGGCCGGgUGG- -5'
6688 5' -68.2 NC_001847.1 + 24173 0.67 0.290833
Target:  5'- -gCUGGaggccagccaaGCaGCCCCGcgaggcucGUCGGCCCGCCc -3'
miRNA:   3'- caGACC-----------CGcCGGGGC--------CGGCCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 24459 0.66 0.36666
Target:  5'- gGUCU-GGCGGCCCaaa-CGGCCCGa- -3'
miRNA:   3'- -CAGAcCCGCCGGGgccgGCCGGGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.