miRNA display CGI


Results 61 - 80 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6688 5' -68.2 NC_001847.1 + 117338 0.69 0.238377
Target:  5'- ---gGGGCGGCCUcgccccccgCGGCCGagcaaagcCCCGCCg -3'
miRNA:   3'- cagaCCCGCCGGG---------GCCGGCc-------GGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 117019 0.67 0.316902
Target:  5'- -cCUGGGCGcuccuGUcugCCCGGCgggGGCUCGCCg -3'
miRNA:   3'- caGACCCGC-----CG---GGGCCGg--CCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 116573 0.68 0.266473
Target:  5'- cUUUGGcGCGGCacaCgGGCCGG-UCACCg -3'
miRNA:   3'- cAGACC-CGCCGg--GgCCGGCCgGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 115856 0.66 0.354826
Target:  5'- cGUUUGuuGGCGGCCcgCCGcacagacgcugcgccGCCGGCUCGCg -3'
miRNA:   3'- -CAGAC--CCGCCGG--GGC---------------CGGCCGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 115775 0.67 0.296549
Target:  5'- ---gGcGGCGGCCCUGGCCaccgucgGGCgCGCg -3'
miRNA:   3'- cagaC-CCGCCGGGGCCGG-------CCGgGUGg -5'
6688 5' -68.2 NC_001847.1 + 115488 0.69 0.227851
Target:  5'- cGUCUGGGCuuGCCCCuggaagggcGCCGcGCCUAUCc -3'
miRNA:   3'- -CAGACCCGc-CGGGGc--------CGGC-CGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 115036 0.71 0.175975
Target:  5'- aUCguaGGGCGGCCacgggcuagcgaUGGCCGGgCCgCGCCg -3'
miRNA:   3'- cAGa--CCCGCCGGg-----------GCCGGCC-GG-GUGG- -5'
6688 5' -68.2 NC_001847.1 + 113731 0.68 0.260071
Target:  5'- -gCUcGGcCGGCCCgaauccuCGGCCGGCCCGa- -3'
miRNA:   3'- caGAcCC-GCCGGG-------GCCGGCCGGGUgg -5'
6688 5' -68.2 NC_001847.1 + 113507 0.71 0.160911
Target:  5'- gGUCgcgcccGGGCGcGgCCCGcGCCGGCCaagCGCCg -3'
miRNA:   3'- -CAGa-----CCCGC-CgGGGC-CGGCCGG---GUGG- -5'
6688 5' -68.2 NC_001847.1 + 113415 0.7 0.20325
Target:  5'- ---cGGGcCGGCgCCGGcCCGcGCCCugCu -3'
miRNA:   3'- cagaCCC-GCCGgGGCC-GGC-CGGGugG- -5'
6688 5' -68.2 NC_001847.1 + 113383 0.66 0.359232
Target:  5'- ---cGGGCccGGCgCCGG-CGGCCCcCCc -3'
miRNA:   3'- cagaCCCG--CCGgGGCCgGCCGGGuGG- -5'
6688 5' -68.2 NC_001847.1 + 113258 0.67 0.297189
Target:  5'- aGUCgcGGGCucGGCCUCGGCa-GCgCGCCg -3'
miRNA:   3'- -CAGa-CCCG--CCGGGGCCGgcCGgGUGG- -5'
6688 5' -68.2 NC_001847.1 + 113164 0.71 0.157145
Target:  5'- cGUCgaccgcGGGCGGCaaCCGGCgccgCGGCCCAgCg -3'
miRNA:   3'- -CAGa-----CCCGCCGg-GGCCG----GCCGGGUgG- -5'
6688 5' -68.2 NC_001847.1 + 112950 0.68 0.28273
Target:  5'- -gCUGggaGGCGcugcugcagcucucGCCCgagcaGGCCGGCCCGCUg -3'
miRNA:   3'- caGAC---CCGC--------------CGGGg----CCGGCCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 112620 0.7 0.198615
Target:  5'- cUUUGuccCGGCagaCCGGcCCGGCCCGCCg -3'
miRNA:   3'- cAGACcc-GCCGg--GGCC-GGCCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 112325 0.73 0.123661
Target:  5'- cUCggcggGGaGCGGCCgCC-GCCGGCCCGCa -3'
miRNA:   3'- cAGa----CC-CGCCGG-GGcCGGCCGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 111292 0.68 0.266473
Target:  5'- ---gGGGCGGCgCUCGGCCgggggcggGGCCCcuuacguggGCCc -3'
miRNA:   3'- cagaCCCGCCG-GGGCCGG--------CCGGG---------UGG- -5'
6688 5' -68.2 NC_001847.1 + 111157 0.71 0.153458
Target:  5'- uUCUGGGacuGGCgCCaaGCCGGCCCAUg -3'
miRNA:   3'- cAGACCCg--CCG-GGgcCGGCCGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 109833 0.67 0.290833
Target:  5'- cUUUGGGCGcGCCCUcGUCGGCgagggCGCCa -3'
miRNA:   3'- cAGACCCGC-CGGGGcCGGCCGg----GUGG- -5'
6688 5' -68.2 NC_001847.1 + 109670 0.69 0.217721
Target:  5'- ---gGGGCGGCgCUuGCUuuGGCCCGCCu -3'
miRNA:   3'- cagaCCCGCCGgGGcCGG--CCGGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.