miRNA display CGI


Results 41 - 60 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6688 5' -68.2 NC_001847.1 + 125329 0.72 0.146319
Target:  5'- ---gGcGGCGGgCCgGGCCGGUCUGCCg -3'
miRNA:   3'- cagaC-CCGCCgGGgCCGGCCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 124574 0.69 0.238377
Target:  5'- ---gGGGgGGCCgCCGGCgccgGGCCCggcGCCg -3'
miRNA:   3'- cagaCCCgCCGG-GGCCGg---CCGGG---UGG- -5'
6688 5' -68.2 NC_001847.1 + 124544 0.7 0.207979
Target:  5'- ---gGGcGCGGgCCgGcGCCGGCCCGCg -3'
miRNA:   3'- cagaCC-CGCCgGGgC-CGGCCGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 124429 0.68 0.272405
Target:  5'- cUCgcuGGCGGCgCuuGGCCGGCgCggGCCg -3'
miRNA:   3'- cAGac-CCGCCG-GggCCGGCCGgG--UGG- -5'
6688 5' -68.2 NC_001847.1 + 124279 0.7 0.183969
Target:  5'- -cCUGGGCGcccgcgcccgccgcGCCUCGGCCacGCgCCGCCg -3'
miRNA:   3'- caGACCCGC--------------CGGGGCCGGc-CG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 123825 0.66 0.374193
Target:  5'- cGUCcuGGCGuuggagguaguGCCCCGGCCcugaGGCCCcgagACCc -3'
miRNA:   3'- -CAGacCCGC-----------CGGGGCCGG----CCGGG----UGG- -5'
6688 5' -68.2 NC_001847.1 + 122411 0.66 0.373435
Target:  5'- -gCUGGGCcGCaCCCGGCCcuccaaaauccugGGCagcggCACCu -3'
miRNA:   3'- caGACCCGcCG-GGGCCGG-------------CCGg----GUGG- -5'
6688 5' -68.2 NC_001847.1 + 121873 0.66 0.35191
Target:  5'- -----cGUGGCCCUGGaCgCGGCCUGCCu -3'
miRNA:   3'- cagaccCGCCGGGGCC-G-GCCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 121209 0.71 0.17149
Target:  5'- ---gGGGCGGCCCCccugccgcGGCgCGGCaccgagcgccccagCCACCg -3'
miRNA:   3'- cagaCCCGCCGGGG--------CCG-GCCG--------------GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 120987 0.67 0.303653
Target:  5'- ---cGcGGCcGCCCCGGCCGccgcugcgcaGCCgGCCg -3'
miRNA:   3'- cagaC-CCGcCGGGGCCGGC----------CGGgUGG- -5'
6688 5' -68.2 NC_001847.1 + 120959 0.66 0.354826
Target:  5'- aUgUGGGCGGaCCCagcgccgcguaagcgCGGCCGucGCCCuagcgGCCg -3'
miRNA:   3'- cAgACCCGCC-GGG---------------GCCGGC--CGGG-----UGG- -5'
6688 5' -68.2 NC_001847.1 + 120911 0.68 0.253229
Target:  5'- -gCUcGGCGuuugcccucaccacGcCCCCGGCCGGCCUgACCg -3'
miRNA:   3'- caGAcCCGC--------------C-GGGGCCGGCCGGG-UGG- -5'
6688 5' -68.2 NC_001847.1 + 120820 0.67 0.296549
Target:  5'- cUCUGcccGCcgcucgaugaGGCCCCgagaggcGGCCGGCCaCGCCa -3'
miRNA:   3'- cAGACc--CG----------CCGGGG-------CCGGCCGG-GUGG- -5'
6688 5' -68.2 NC_001847.1 + 120182 0.66 0.374193
Target:  5'- cUCUGgauGGUGGUgCUGGCCGcgcgagcggcGCCCGCUc -3'
miRNA:   3'- cAGAC---CCGCCGgGGCCGGC----------CGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 120116 0.7 0.18526
Target:  5'- cUCgcccGGCGGCCgCGGCucgcgCGGCcCCACCg -3'
miRNA:   3'- cAGac--CCGCCGGgGCCG-----GCCG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 119993 0.66 0.347567
Target:  5'- cGUCcaaGCGGCCCCgacgcgcaguagcaaGGCCaGCaCCGCCg -3'
miRNA:   3'- -CAGaccCGCCGGGG---------------CCGGcCG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 119572 0.68 0.254926
Target:  5'- cUCUGcgggcagcGGCGGCCgCGGCCcgacGGCCgCGCg -3'
miRNA:   3'- cAGAC--------CCGCCGGgGCCGG----CCGG-GUGg -5'
6688 5' -68.2 NC_001847.1 + 119526 0.7 0.189621
Target:  5'- ---gGcGGCGGCCgCGGCCGGCagGCUg -3'
miRNA:   3'- cagaC-CCGCCGGgGCCGGCCGggUGG- -5'
6688 5' -68.2 NC_001847.1 + 118231 0.7 0.180987
Target:  5'- cGUCUGcgccgaGCGGCCCgGGCUGGUaaACCu -3'
miRNA:   3'- -CAGACc-----CGCCGGGgCCGGCCGggUGG- -5'
6688 5' -68.2 NC_001847.1 + 117818 0.67 0.303001
Target:  5'- ---cGGuGUGGCCCugcaccacaagagCGGaCCGGCCCgACCu -3'
miRNA:   3'- cagaCC-CGCCGGG-------------GCC-GGCCGGG-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.