miRNA display CGI


Results 41 - 60 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6688 5' -68.2 NC_001847.1 + 11662 0.78 0.053319
Target:  5'- -cUUGcGGCGGCCCCaGCCGaGCCCGCg -3'
miRNA:   3'- caGAC-CCGCCGGGGcCGGC-CGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 11892 0.67 0.290833
Target:  5'- aUCUGGuGCGGCCgggguCCGcGCUGGCgCGgCa -3'
miRNA:   3'- cAGACC-CGCCGG-----GGC-CGGCCGgGUgG- -5'
6688 5' -68.2 NC_001847.1 + 12295 0.66 0.347567
Target:  5'- ---aGGGgGuGCCCCGcaagacuacuugaCGGCCCACCu -3'
miRNA:   3'- cagaCCCgC-CGGGGCcg-----------GCCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 12324 0.7 0.18526
Target:  5'- --gUGGGCGcGCCC--GCCGGCUCGCUg -3'
miRNA:   3'- cagACCCGC-CGGGgcCGGCCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 12936 0.66 0.35191
Target:  5'- ---aGGGCacccGGCCCCGGCuaguguggCGGCgCGCg -3'
miRNA:   3'- cagaCCCG----CCGGGGCCG--------GCCGgGUGg -5'
6688 5' -68.2 NC_001847.1 + 13129 0.71 0.157145
Target:  5'- ---cGGGCGGCgCCGcGCCG-CCUGCCg -3'
miRNA:   3'- cagaCCCGCCGgGGC-CGGCcGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 13389 0.67 0.301702
Target:  5'- cGUCcGGGCGcGCCgCgGGCCcugggagaaagacgGGCgCGCCa -3'
miRNA:   3'- -CAGaCCCGC-CGG-GgCCGG--------------CCGgGUGG- -5'
6688 5' -68.2 NC_001847.1 + 13480 0.67 0.316902
Target:  5'- gGUCgcGGGCuuGGCCUCGGCCaucaGCCCGa- -3'
miRNA:   3'- -CAGa-CCCG--CCGGGGCCGGc---CGGGUgg -5'
6688 5' -68.2 NC_001847.1 + 14134 0.69 0.217721
Target:  5'- ---cGGGCGuGUCuCCGGCCGGCUgCGCa -3'
miRNA:   3'- cagaCCCGC-CGG-GGCCGGCCGG-GUGg -5'
6688 5' -68.2 NC_001847.1 + 14153 0.71 0.157145
Target:  5'- -cCUGGGCGGCCgcuagggcgaCGGCCGcGCUUACg -3'
miRNA:   3'- caGACCCGCCGGg---------GCCGGC-CGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 14456 0.68 0.260648
Target:  5'- --gUGcGCGGCCgCGGCCucugggucuccgGGCUCACCg -3'
miRNA:   3'- cagACcCGCCGGgGCCGG------------CCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 15115 0.66 0.337585
Target:  5'- gGUCggGGGagGGCCuaGGCCG-CUCACCc -3'
miRNA:   3'- -CAGa-CCCg-CCGGggCCGGCcGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 15395 0.67 0.316902
Target:  5'- cGUCgGGGCugGGgCCgGGUuuCGGCUCGCCc -3'
miRNA:   3'- -CAGaCCCG--CCgGGgCCG--GCCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 15407 0.73 0.117811
Target:  5'- -gCUGGGCGGCCCUGGagcgCGGCaCgGCg -3'
miRNA:   3'- caGACCCGCCGGGGCCg---GCCG-GgUGg -5'
6688 5' -68.2 NC_001847.1 + 15478 0.68 0.278441
Target:  5'- -cCUGGGgGGCCgCCGuuGCCcuCCCGCCc -3'
miRNA:   3'- caGACCCgCCGG-GGC--CGGccGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 15595 0.71 0.17149
Target:  5'- aGUCUGGccGCGcGCCCCuugcccagccugccGGCCGcGgCCGCCg -3'
miRNA:   3'- -CAGACC--CGC-CGGGG--------------CCGGC-CgGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 15767 0.66 0.344694
Target:  5'- ---cGGGCGGCCCgCuuucGCCGGCggcaagCGCCg -3'
miRNA:   3'- cagaCCCGCCGGG-Gc---CGGCCGg-----GUGG- -5'
6688 5' -68.2 NC_001847.1 + 16235 0.73 0.126687
Target:  5'- cGUCccGGccuCGGCCCCGGCCccGGCCCcgGCCc -3'
miRNA:   3'- -CAGa-CCc--GCCGGGGCCGG--CCGGG--UGG- -5'
6688 5' -68.2 NC_001847.1 + 17065 0.72 0.146319
Target:  5'- ---cGGGCGGUaaaCGGCCGGCgUGCCa -3'
miRNA:   3'- cagaCCCGCCGgg-GCCGGCCGgGUGG- -5'
6688 5' -68.2 NC_001847.1 + 17669 0.66 0.344694
Target:  5'- cGUC--GGCGGCUCgCGGUCcgccgGGCaCCACCg -3'
miRNA:   3'- -CAGacCCGCCGGG-GCCGG-----CCG-GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.