miRNA display CGI


Results 81 - 100 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6688 5' -68.2 NC_001847.1 + 24947 0.7 0.180987
Target:  5'- -gCUGGGCGGCuugCCCGGCagguGGCgCAgCa -3'
miRNA:   3'- caGACCCGCCG---GGGCCGg---CCGgGUgG- -5'
6688 5' -68.2 NC_001847.1 + 25193 0.68 0.272405
Target:  5'- -gCUGGccaGCGaGCCCCGcGCgCGGCCgGCa -3'
miRNA:   3'- caGACC---CGC-CGGGGC-CG-GCCGGgUGg -5'
6688 5' -68.2 NC_001847.1 + 25320 0.74 0.099309
Target:  5'- ---aGGGCGcGCCCaaaGGCCGGCUC-CCg -3'
miRNA:   3'- cagaCCCGC-CGGGg--CCGGCCGGGuGG- -5'
6688 5' -68.2 NC_001847.1 + 25750 0.68 0.284584
Target:  5'- ---cGGGCGGCggCGGCaCGGCaCCGCa -3'
miRNA:   3'- cagaCCCGCCGggGCCG-GCCG-GGUGg -5'
6688 5' -68.2 NC_001847.1 + 26397 0.66 0.374193
Target:  5'- ---cGGGCGGgCCCGucguccGCCG-CCCAUCc -3'
miRNA:   3'- cagaCCCGCCgGGGC------CGGCcGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 26488 0.69 0.217225
Target:  5'- ---gGGGCGGgCCUggugcaaGGCgGGCCUGCCg -3'
miRNA:   3'- cagaCCCGCCgGGG-------CCGgCCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 26495 0.73 0.113317
Target:  5'- cGUCc--GCGGCCCCGGCCacuucugcagcgucGCCCGCCg -3'
miRNA:   3'- -CAGaccCGCCGGGGCCGGc-------------CGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 26649 1.09 0.000222
Target:  5'- gGUCUGGGCGGCCCCGGCCGGCCCACCu -3'
miRNA:   3'- -CAGACCCGCCGGGGCCGGCCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 26991 0.66 0.35191
Target:  5'- ---cGGcCGGCUagccagcuccgaCCGGCCGGCCUucuGCCa -3'
miRNA:   3'- cagaCCcGCCGG------------GGCCGGCCGGG---UGG- -5'
6688 5' -68.2 NC_001847.1 + 27454 0.67 0.290833
Target:  5'- ---cGGG-GGCCCU-GCCGcuGCCCGCCg -3'
miRNA:   3'- cagaCCCgCCGGGGcCGGC--CGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 27971 0.66 0.36666
Target:  5'- gGUCgcggugGaGGCGGCCgCGGCCGGggcggaggCgGCCg -3'
miRNA:   3'- -CAGa-----C-CCGCCGGgGCCGGCCg-------GgUGG- -5'
6688 5' -68.2 NC_001847.1 + 29020 0.69 0.222737
Target:  5'- ---cGGcaGCGGCgCCCGcGCCGcGCUCGCCg -3'
miRNA:   3'- cagaCC--CGCCG-GGGC-CGGC-CGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 29173 0.71 0.172703
Target:  5'- -gCUGgaGGCGGCCcgCCGcgccGCCGGCgCCGCCg -3'
miRNA:   3'- caGAC--CCGCCGG--GGC----CGGCCG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 29227 0.67 0.310224
Target:  5'- ---cGcGGCGGgCCgCGGCCuGCCgGCCg -3'
miRNA:   3'- cagaC-CCGCCgGG-GCCGGcCGGgUGG- -5'
6688 5' -68.2 NC_001847.1 + 29297 0.67 0.329888
Target:  5'- cUCcGGGCcGCCgagcugcUCGGCgCGGCCCGCg -3'
miRNA:   3'- cAGaCCCGcCGG-------GGCCG-GCCGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 29357 0.67 0.330583
Target:  5'- ---cGcGCGGCCCCGGC-GGCgCugCg -3'
miRNA:   3'- cagaCcCGCCGGGGCCGgCCGgGugG- -5'
6688 5' -68.2 NC_001847.1 + 29442 0.66 0.365912
Target:  5'- -gCUgGGGCGuggcgccGCCCgCGGCCGaaGCgCCGCCc -3'
miRNA:   3'- caGA-CCCGC-------CGGG-GCCGGC--CG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 29461 0.66 0.344694
Target:  5'- ---cGcGGCGGCCCgCGcGUCGGCCUgggcGCUg -3'
miRNA:   3'- cagaC-CCGCCGGG-GC-CGGCCGGG----UGG- -5'
6688 5' -68.2 NC_001847.1 + 29508 0.68 0.272405
Target:  5'- ---cGGGCGGCgCuUCGGCCGcagaGCUCGCCc -3'
miRNA:   3'- cagaCCCGCCG-G-GGCCGGC----CGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 29569 0.68 0.272405
Target:  5'- ---cGGG-GGCgCCGgcGCCGGCgCCGCCg -3'
miRNA:   3'- cagaCCCgCCGgGGC--CGGCCG-GGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.