Results 81 - 100 of 391 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6688 | 5' | -68.2 | NC_001847.1 | + | 118231 | 0.7 | 0.180987 |
Target: 5'- cGUCUGcgccgaGCGGCCCgGGCUGGUaaACCu -3' miRNA: 3'- -CAGACc-----CGCCGGGgCCGGCCGggUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 124279 | 0.7 | 0.183969 |
Target: 5'- -cCUGGGCGcccgcgcccgccgcGCCUCGGCCacGCgCCGCCg -3' miRNA: 3'- caGACCCGC--------------CGGGGCCGGc-CG-GGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 125394 | 0.7 | 0.18526 |
Target: 5'- ---cGGGC-GCCCCggGGCagGGCCCGCCc -3' miRNA: 3'- cagaCCCGcCGGGG--CCGg-CCGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 12324 | 0.7 | 0.18526 |
Target: 5'- --gUGGGCGcGCCC--GCCGGCUCGCUg -3' miRNA: 3'- cagACCCGC-CGGGgcCGGCCGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 120116 | 0.7 | 0.18526 |
Target: 5'- cUCgcccGGCGGCCgCGGCucgcgCGGCcCCACCg -3' miRNA: 3'- cAGac--CCGCCGGgGCCG-----GCCG-GGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 109387 | 0.7 | 0.18526 |
Target: 5'- -gCUGGGCugcGGUgCCGuGCCGccgccGCCCGCCg -3' miRNA: 3'- caGACCCG---CCGgGGC-CGGC-----CGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 22581 | 0.7 | 0.18526 |
Target: 5'- ---cGGGC-GCCCCggGGCagGGCCCGCCc -3' miRNA: 3'- cagaCCCGcCGGGG--CCGg-CCGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 104756 | 0.7 | 0.188303 |
Target: 5'- -aCUcGGGCcGCCggcgcucguccucgCCGGgCGGCCCGCCa -3' miRNA: 3'- caGA-CCCGcCGG--------------GGCCgGCCGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 135060 | 0.7 | 0.189621 |
Target: 5'- ---gGGGCGGagCCCagagcgGGCCcgGGCCCGCCg -3' miRNA: 3'- cagaCCCGCCg-GGG------CCGG--CCGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 54390 | 0.7 | 0.189621 |
Target: 5'- ---cGGGCGGCCgCgggcgaGGCgGGCgCCGCCg -3' miRNA: 3'- cagaCCCGCCGGgG------CCGgCCG-GGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 32247 | 0.7 | 0.189621 |
Target: 5'- ---gGGGCGGagCCCagagcgGGCCcgGGCCCGCCg -3' miRNA: 3'- cagaCCCGCCg-GGG------CCGG--CCGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 36362 | 0.7 | 0.189621 |
Target: 5'- -aCUGGucccuGCGGCCCUGGCgaCGGCauCUACCg -3' miRNA: 3'- caGACC-----CGCCGGGGCCG--GCCG--GGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 119526 | 0.7 | 0.189621 |
Target: 5'- ---gGcGGCGGCCgCGGCCGGCagGCUg -3' miRNA: 3'- cagaC-CCGCCGGgGCCGGCCGggUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 32092 | 0.7 | 0.191391 |
Target: 5'- -aUUGGggggaggggggaaacGCGGCUgCGGCCcGCCCGCCg -3' miRNA: 3'- caGACC---------------CGCCGGgGCCGGcCGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 20028 | 0.7 | 0.194073 |
Target: 5'- ---aGGGCGGCCCugCGGCCG--CCGCCc -3' miRNA: 3'- cagaCCCGCCGGG--GCCGGCcgGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 90840 | 0.7 | 0.194073 |
Target: 5'- cUCUGGcGCuGGCCcgCCGcGCCGcGCCgCGCCg -3' miRNA: 3'- cAGACC-CG-CCGG--GGC-CGGC-CGG-GUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 102919 | 0.7 | 0.194073 |
Target: 5'- -cCUGGGUccggcgccccGcGCCCCGGCCccGCCCGCg -3' miRNA: 3'- caGACCCG----------C-CGGGGCCGGc-CGGGUGg -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 35785 | 0.7 | 0.194073 |
Target: 5'- -gCUGGGUcgcaggGGCCaagauccgcCCGGCC-GCCCACCc -3' miRNA: 3'- caGACCCG------CCGG---------GGCCGGcCGGGUGG- -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 106 | 0.7 | 0.194073 |
Target: 5'- -cCUGGGUccggcgccccGcGCCCCGGCCccGCCCGCg -3' miRNA: 3'- caGACCCG----------C-CGGGGCCGGc-CGGGUGg -5' |
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6688 | 5' | -68.2 | NC_001847.1 | + | 44819 | 0.7 | 0.198615 |
Target: 5'- -gCUGcGCccccGGCCCCGG-CGGCcCCACCg -3' miRNA: 3'- caGACcCG----CCGGGGCCgGCCG-GGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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