miRNA display CGI


Results 81 - 100 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6688 5' -68.2 NC_001847.1 + 118231 0.7 0.180987
Target:  5'- cGUCUGcgccgaGCGGCCCgGGCUGGUaaACCu -3'
miRNA:   3'- -CAGACc-----CGCCGGGgCCGGCCGggUGG- -5'
6688 5' -68.2 NC_001847.1 + 124279 0.7 0.183969
Target:  5'- -cCUGGGCGcccgcgcccgccgcGCCUCGGCCacGCgCCGCCg -3'
miRNA:   3'- caGACCCGC--------------CGGGGCCGGc-CG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 125394 0.7 0.18526
Target:  5'- ---cGGGC-GCCCCggGGCagGGCCCGCCc -3'
miRNA:   3'- cagaCCCGcCGGGG--CCGg-CCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 12324 0.7 0.18526
Target:  5'- --gUGGGCGcGCCC--GCCGGCUCGCUg -3'
miRNA:   3'- cagACCCGC-CGGGgcCGGCCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 120116 0.7 0.18526
Target:  5'- cUCgcccGGCGGCCgCGGCucgcgCGGCcCCACCg -3'
miRNA:   3'- cAGac--CCGCCGGgGCCG-----GCCG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 109387 0.7 0.18526
Target:  5'- -gCUGGGCugcGGUgCCGuGCCGccgccGCCCGCCg -3'
miRNA:   3'- caGACCCG---CCGgGGC-CGGC-----CGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 22581 0.7 0.18526
Target:  5'- ---cGGGC-GCCCCggGGCagGGCCCGCCc -3'
miRNA:   3'- cagaCCCGcCGGGG--CCGg-CCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 104756 0.7 0.188303
Target:  5'- -aCUcGGGCcGCCggcgcucguccucgCCGGgCGGCCCGCCa -3'
miRNA:   3'- caGA-CCCGcCGG--------------GGCCgGCCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 135060 0.7 0.189621
Target:  5'- ---gGGGCGGagCCCagagcgGGCCcgGGCCCGCCg -3'
miRNA:   3'- cagaCCCGCCg-GGG------CCGG--CCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 54390 0.7 0.189621
Target:  5'- ---cGGGCGGCCgCgggcgaGGCgGGCgCCGCCg -3'
miRNA:   3'- cagaCCCGCCGGgG------CCGgCCG-GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 32247 0.7 0.189621
Target:  5'- ---gGGGCGGagCCCagagcgGGCCcgGGCCCGCCg -3'
miRNA:   3'- cagaCCCGCCg-GGG------CCGG--CCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 36362 0.7 0.189621
Target:  5'- -aCUGGucccuGCGGCCCUGGCgaCGGCauCUACCg -3'
miRNA:   3'- caGACC-----CGCCGGGGCCG--GCCG--GGUGG- -5'
6688 5' -68.2 NC_001847.1 + 119526 0.7 0.189621
Target:  5'- ---gGcGGCGGCCgCGGCCGGCagGCUg -3'
miRNA:   3'- cagaC-CCGCCGGgGCCGGCCGggUGG- -5'
6688 5' -68.2 NC_001847.1 + 32092 0.7 0.191391
Target:  5'- -aUUGGggggaggggggaaacGCGGCUgCGGCCcGCCCGCCg -3'
miRNA:   3'- caGACC---------------CGCCGGgGCCGGcCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 20028 0.7 0.194073
Target:  5'- ---aGGGCGGCCCugCGGCCG--CCGCCc -3'
miRNA:   3'- cagaCCCGCCGGG--GCCGGCcgGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 90840 0.7 0.194073
Target:  5'- cUCUGGcGCuGGCCcgCCGcGCCGcGCCgCGCCg -3'
miRNA:   3'- cAGACC-CG-CCGG--GGC-CGGC-CGG-GUGG- -5'
6688 5' -68.2 NC_001847.1 + 102919 0.7 0.194073
Target:  5'- -cCUGGGUccggcgccccGcGCCCCGGCCccGCCCGCg -3'
miRNA:   3'- caGACCCG----------C-CGGGGCCGGc-CGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 35785 0.7 0.194073
Target:  5'- -gCUGGGUcgcaggGGCCaagauccgcCCGGCC-GCCCACCc -3'
miRNA:   3'- caGACCCG------CCGG---------GGCCGGcCGGGUGG- -5'
6688 5' -68.2 NC_001847.1 + 106 0.7 0.194073
Target:  5'- -cCUGGGUccggcgccccGcGCCCCGGCCccGCCCGCg -3'
miRNA:   3'- caGACCCG----------C-CGGGGCCGGc-CGGGUGg -5'
6688 5' -68.2 NC_001847.1 + 44819 0.7 0.198615
Target:  5'- -gCUGcGCccccGGCCCCGG-CGGCcCCACCg -3'
miRNA:   3'- caGACcCG----CCGGGGCCgGCCG-GGUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.