miRNA display CGI


Results 21 - 40 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 104048 0.66 0.476737
Target:  5'- gCCCGCaggccagguacacCGGCCGCaGCGGCGcgccGAGc -3'
miRNA:   3'- gGGGCG-------------GCCGGCGgCGCCGCucu-CUC- -5'
6689 3' -66.3 NC_001847.1 + 1235 0.66 0.476737
Target:  5'- gCCCGCaggccagguacacCGGCCGCaGCGGCGcgccGAGc -3'
miRNA:   3'- gGGGCG-------------GCCGGCGgCGCCGCucu-CUC- -5'
6689 3' -66.3 NC_001847.1 + 40968 0.66 0.476737
Target:  5'- gCCCGCgcgaGGCgGCCGCGcccagcagccgccGCGAGAu-- -3'
miRNA:   3'- gGGGCGg---CCGgCGGCGC-------------CGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 122509 0.66 0.472359
Target:  5'- cCCCCGCa-GCCGCaGCGGCcgccuccauguugagGAGcGGGGg -3'
miRNA:   3'- -GGGGCGgcCGGCGgCGCCG---------------CUC-UCUC- -5'
6689 3' -66.3 NC_001847.1 + 30919 0.66 0.468872
Target:  5'- gCgCGCCGGCgG-UGCGGCG-GAGGc -3'
miRNA:   3'- gGgGCGGCCGgCgGCGCCGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 35696 0.66 0.468872
Target:  5'- -gCUGCUGGCgGCCGUGGa-GGAGGc -3'
miRNA:   3'- ggGGCGGCCGgCGGCGCCgcUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 88557 0.66 0.468872
Target:  5'- gCgUGaCCGcGCuCGCgCGCGGCGcGAGAGa -3'
miRNA:   3'- gGgGC-GGC-CG-GCG-GCGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 116197 0.66 0.468872
Target:  5'- uCgCCGCCacggacGCCGCgGCGGCGcuGGAa -3'
miRNA:   3'- -GgGGCGGc-----CGGCGgCGCCGCucUCUc -5'
6689 3' -66.3 NC_001847.1 + 61869 0.66 0.468872
Target:  5'- gCCUGCCGGCgC-CCGCggggguugcacGGCGAGcGGAa -3'
miRNA:   3'- gGGGCGGCCG-GcGGCG-----------CCGCUC-UCUc -5'
6689 3' -66.3 NC_001847.1 + 39754 0.66 0.468872
Target:  5'- uCCCCggcGCCGGCCucagaGCCGgCGGCGcGGu-- -3'
miRNA:   3'- -GGGG---CGGCCGG-----CGGC-GCCGCuCUcuc -5'
6689 3' -66.3 NC_001847.1 + 75227 0.66 0.468872
Target:  5'- uUCCGCCGGCucuCGCCGCGcGCGc----- -3'
miRNA:   3'- gGGGCGGCCG---GCGGCGC-CGCucucuc -5'
6689 3' -66.3 NC_001847.1 + 123570 0.66 0.468872
Target:  5'- ---gGCCggGGCCGCCGCGaGCGGGGc-- -3'
miRNA:   3'- ggggCGG--CCGGCGGCGC-CGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 134350 0.66 0.4628
Target:  5'- cCCCCGCCucgucggacgacgacGaggccggcGCCGCCgGCGGCGGGccggccucgcccuAGGGg -3'
miRNA:   3'- -GGGGCGG---------------C--------CGGCGG-CGCCGCUC-------------UCUC- -5'
6689 3' -66.3 NC_001847.1 + 31537 0.66 0.4628
Target:  5'- cCCCCGCCucgucggacgacgacGaggccggcGCCGCCgGCGGCGGGccggccucgcccuAGGGg -3'
miRNA:   3'- -GGGGCGG---------------C--------CGGCGG-CGCCGCUC-------------UCUC- -5'
6689 3' -66.3 NC_001847.1 + 122138 0.66 0.460211
Target:  5'- -aCgGCCGGCgcgcagggCGCCGCG-CGGGAcGAGg -3'
miRNA:   3'- ggGgCGGCCG--------GCGGCGCcGCUCU-CUC- -5'
6689 3' -66.3 NC_001847.1 + 35893 0.66 0.460211
Target:  5'- ---aGUCGGCgGCgGCGGCGuGGGAc -3'
miRNA:   3'- ggggCGGCCGgCGgCGCCGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 34088 0.66 0.460211
Target:  5'- gCgUGgCGGCCGCCguggcucgcGCGGCGGcGGAGc -3'
miRNA:   3'- gGgGCgGCCGGCGG---------CGCCGCUcUCUC- -5'
6689 3' -66.3 NC_001847.1 + 13140 0.66 0.460211
Target:  5'- gCgCCGCCuGCCGCgGCcGGCGGuuGGGc -3'
miRNA:   3'- -GgGGCGGcCGGCGgCG-CCGCUcuCUC- -5'
6689 3' -66.3 NC_001847.1 + 21502 0.66 0.460211
Target:  5'- aUuuGCCgGGCgCGCCuCGGCGGGGGc- -3'
miRNA:   3'- gGggCGG-CCG-GCGGcGCCGCUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 4403 0.66 0.460211
Target:  5'- uCgCCGCCGucgacGCCGaCgGCGGCGAGcgcgcgccgcAGGGa -3'
miRNA:   3'- -GgGGCGGC-----CGGC-GgCGCCGCUC----------UCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.