miRNA display CGI


Results 21 - 40 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 3535 0.66 0.434753
Target:  5'- -gCCGacuaCGGCCGCgagCGCGGCGGcggcguaguuGAGGGu -3'
miRNA:   3'- ggGGCg---GCCGGCG---GCGCCGCU----------CUCUC- -5'
6689 3' -66.3 NC_001847.1 + 50060 0.66 0.451636
Target:  5'- -gCCGCgGGuCCGCgCGCGGCGcGGAcccGGGc -3'
miRNA:   3'- ggGGCGgCC-GGCG-GCGCCGC-UCU---CUC- -5'
6689 3' -66.3 NC_001847.1 + 101464 0.66 0.42645
Target:  5'- gCCgCCGCgCGGCCGCaaggGCGGCGcgcuagcGAccGAGg -3'
miRNA:   3'- -GG-GGCG-GCCGGCGg---CGCCGCu------CU--CUC- -5'
6689 3' -66.3 NC_001847.1 + 117901 0.66 0.451636
Target:  5'- uCCCCGCCcuuguugaGGuuGaCGCGGUGuGGGGc -3'
miRNA:   3'- -GGGGCGG--------CCggCgGCGCCGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 116428 0.66 0.451636
Target:  5'- gCCCGCUGGCgCuccCCGCGGCGcuGGcGg -3'
miRNA:   3'- gGGGCGGCCG-Gc--GGCGCCGCucUCuC- -5'
6689 3' -66.3 NC_001847.1 + 76637 0.66 0.42645
Target:  5'- uCCCUGCCcGUCGCCcugcccgaggGCGGgGAGGGc- -3'
miRNA:   3'- -GGGGCGGcCGGCGG----------CGCCgCUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 93821 0.66 0.434753
Target:  5'- uCCCCGCUGGacuuugCGCCGC-GCGAGc--- -3'
miRNA:   3'- -GGGGCGGCCg-----GCGGCGcCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 25340 0.66 0.459349
Target:  5'- cUCCCGCaucguccacguggCGGCgGUCGCGGCGAu---- -3'
miRNA:   3'- -GGGGCG-------------GCCGgCGGCGCCGCUcucuc -5'
6689 3' -66.3 NC_001847.1 + 84333 0.66 0.434753
Target:  5'- cCCCCGuaaaaccguaCCGGCCGCaGCGccGCGAGGu-- -3'
miRNA:   3'- -GGGGC----------GGCCGGCGgCGC--CGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 11316 0.66 0.433918
Target:  5'- gCCCGCCgaGGCCGgCG-GGCGGcuggcgccggagcGGGAGc -3'
miRNA:   3'- gGGGCGG--CCGGCgGCgCCGCU-------------CUCUC- -5'
6689 3' -66.3 NC_001847.1 + 34805 0.66 0.459349
Target:  5'- aCCCG-CGGCCGCuggCGCGGCaGGccgaccgggcgcuGGAGg -3'
miRNA:   3'- gGGGCgGCCGGCG---GCGCCGcUC-------------UCUC- -5'
6689 3' -66.3 NC_001847.1 + 80691 0.66 0.443149
Target:  5'- gCgCCGgCGGCgGCUGCGGCuGGaAGAa -3'
miRNA:   3'- -GgGGCgGCCGgCGGCGCCGcUC-UCUc -5'
6689 3' -66.3 NC_001847.1 + 13140 0.66 0.460211
Target:  5'- gCgCCGCCuGCCGCgGCcGGCGGuuGGGc -3'
miRNA:   3'- -GgGGCGGcCGGCGgCG-CCGCUcuCUC- -5'
6689 3' -66.3 NC_001847.1 + 35893 0.66 0.460211
Target:  5'- ---aGUCGGCgGCgGCGGCGuGGGAc -3'
miRNA:   3'- ggggCGGCCGgCGgCGCCGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 34396 0.66 0.451636
Target:  5'- -gCCGCC-GCCGCggcagaCGCGGCGcuGGGGg -3'
miRNA:   3'- ggGGCGGcCGGCG------GCGCCGCucUCUC- -5'
6689 3' -66.3 NC_001847.1 + 35244 0.66 0.443149
Target:  5'- -gCgGCCGGCgGgCgCGCGGCG-GAGAu -3'
miRNA:   3'- ggGgCGGCCGgC-G-GCGCCGCuCUCUc -5'
6689 3' -66.3 NC_001847.1 + 5239 0.66 0.434753
Target:  5'- gCUCCGUgcaGGUCuCCGCGG-GGGAGGGg -3'
miRNA:   3'- -GGGGCGg--CCGGcGGCGCCgCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 134049 0.66 0.434753
Target:  5'- gCgCCGCCcGCgGCCGCGGCGcccggcguGGAcuGGGa -3'
miRNA:   3'- -GgGGCGGcCGgCGGCGCCGC--------UCU--CUC- -5'
6689 3' -66.3 NC_001847.1 + 19933 0.66 0.457629
Target:  5'- aCCUGCCGcaccuuuugcagcaGCCGCCGaauccCGAGGGGGa -3'
miRNA:   3'- gGGGCGGC--------------CGGCGGCgcc--GCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 3356 0.66 0.42645
Target:  5'- aCgCUGCCGGCCGCCGCaauccGCGcgccGAGc -3'
miRNA:   3'- -GgGGCGGCCGGCGGCGc----CGCucu-CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.