miRNA display CGI


Results 1 - 20 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 132012 0.66 0.433918
Target:  5'- gCgCCGCCgGGCUcccggugcucucgGCCGCGGCGGGc--- -3'
miRNA:   3'- -GgGGCGG-CCGG-------------CGGCGCCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 3535 0.66 0.434753
Target:  5'- -gCCGacuaCGGCCGCgagCGCGGCGGcggcguaguuGAGGGu -3'
miRNA:   3'- ggGGCg---GCCGGCG---GCGCCGCU----------CUCUC- -5'
6689 3' -66.3 NC_001847.1 + 76637 0.66 0.42645
Target:  5'- uCCCUGCCcGUCGCCcugcccgaggGCGGgGAGGGc- -3'
miRNA:   3'- -GGGGCGGcCGGCGG----------CGCCgCUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 132389 0.66 0.42645
Target:  5'- gCCggCGCCGgcGCCGCCGCGcCGGGccGGGGg -3'
miRNA:   3'- gGG--GCGGC--CGGCGGCGCcGCUC--UCUC- -5'
6689 3' -66.3 NC_001847.1 + 45255 0.66 0.42976
Target:  5'- gCgCCGCCGGCgugagcgcggcgaagCccGCCGCGGCGAGccGGc -3'
miRNA:   3'- -GgGGCGGCCG---------------G--CGGCGCCGCUCucUC- -5'
6689 3' -66.3 NC_001847.1 + 5239 0.66 0.434753
Target:  5'- gCUCCGUgcaGGUCuCCGCGG-GGGAGGGg -3'
miRNA:   3'- -GGGGCGg--CCGGcGGCGCCgCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 11316 0.66 0.433918
Target:  5'- gCCCGCCgaGGCCGgCG-GGCGGcuggcgccggagcGGGAGc -3'
miRNA:   3'- gGGGCGG--CCGGCgGCgCCGCU-------------CUCUC- -5'
6689 3' -66.3 NC_001847.1 + 36372 0.66 0.425624
Target:  5'- gCgCCGCCGcggcccgggcagcGCgCGCCGCGGCGAcGGuGc -3'
miRNA:   3'- -GgGGCGGC-------------CG-GCGGCGCCGCUcUCuC- -5'
6689 3' -66.3 NC_001847.1 + 31865 0.66 0.42645
Target:  5'- gCUCGCCGGCguUGCUGCcGGCG-GAGc- -3'
miRNA:   3'- gGGGCGGCCG--GCGGCG-CCGCuCUCuc -5'
6689 3' -66.3 NC_001847.1 + 3356 0.66 0.42645
Target:  5'- aCgCUGCCGGCCGCCGCaauccGCGcgccGAGc -3'
miRNA:   3'- -GgGGCGGCCGGCGGCGc----CGCucu-CUC- -5'
6689 3' -66.3 NC_001847.1 + 11090 0.66 0.42645
Target:  5'- aCCCCGUgcuguucaaccaCGG-CGUCGUGGCGcuGGAGg -3'
miRNA:   3'- -GGGGCG------------GCCgGCGGCGCCGCucUCUC- -5'
6689 3' -66.3 NC_001847.1 + 105691 0.66 0.42645
Target:  5'- aCgCGCgGGCCGCCGCGccGCGcGucGAGu -3'
miRNA:   3'- gGgGCGgCCGGCGGCGC--CGCuCu-CUC- -5'
6689 3' -66.3 NC_001847.1 + 131345 0.66 0.43142
Target:  5'- gCCgCCGcCCGGCCGCgugcgcuucggcggCGCGGgCGAcacccgcGAGGGc -3'
miRNA:   3'- -GG-GGC-GGCCGGCG--------------GCGCC-GCU-------CUCUC- -5'
6689 3' -66.3 NC_001847.1 + 93821 0.66 0.434753
Target:  5'- uCCCCGCUGGacuuugCGCCGC-GCGAGc--- -3'
miRNA:   3'- -GGGGCGGCCg-----GCGGCGcCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 84333 0.66 0.434753
Target:  5'- cCCCCGuaaaaccguaCCGGCCGCaGCGccGCGAGGu-- -3'
miRNA:   3'- -GGGGC----------GGCCGGCGgCGC--CGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 64349 0.66 0.434753
Target:  5'- cCCCUcCCGGCCccGCCGCGaaGCGAGccgccAGAc -3'
miRNA:   3'- -GGGGcGGCCGG--CGGCGC--CGCUC-----UCUc -5'
6689 3' -66.3 NC_001847.1 + 134049 0.66 0.434753
Target:  5'- gCgCCGCCcGCgGCCGCGGCGcccggcguGGAcuGGGa -3'
miRNA:   3'- -GgGGCGGcCGgCGGCGCCGC--------UCU--CUC- -5'
6689 3' -66.3 NC_001847.1 + 132365 0.66 0.434753
Target:  5'- gCCCUGgaGGCCGCC--GGCGGGGGc- -3'
miRNA:   3'- -GGGGCggCCGGCGGcgCCGCUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 83036 0.66 0.423977
Target:  5'- gCCCG-CGGCCgcuagugcgcuuggGCCGCGGCGcGGccgaAGAGc -3'
miRNA:   3'- gGGGCgGCCGG--------------CGGCGCCGC-UC----UCUC- -5'
6689 3' -66.3 NC_001847.1 + 101464 0.66 0.42645
Target:  5'- gCCgCCGCgCGGCCGCaaggGCGGCGcgcuagcGAccGAGg -3'
miRNA:   3'- -GG-GGCG-GCCGGCGg---CGCCGCu------CU--CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.