miRNA display CGI


Results 1 - 20 of 487 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 4 0.67 0.415797
Target:  5'- uCCgCGCCGcGCCG-CGCGGgcccccugcgacccCGGGGGGGu -3'
miRNA:   3'- -GGgGCGGC-CGGCgGCGCC--------------GCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 44 0.68 0.334643
Target:  5'- uUCCGCgCGGCgCGUgcauUGCGGCGGGcGGGGg -3'
miRNA:   3'- gGGGCG-GCCG-GCG----GCGCCGCUC-UCUC- -5'
6689 3' -66.3 NC_001847.1 + 131 0.69 0.307427
Target:  5'- gCCCCGCCcgcgGGCCucggGCCcCGGCcGGGGGGc -3'
miRNA:   3'- -GGGGCGG----CCGG----CGGcGCCGcUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 753 0.68 0.348897
Target:  5'- cCCCCuagggcgagGCCGGcCCGCCGCcGGCGGc---- -3'
miRNA:   3'- -GGGG---------CGGCC-GGCGGCG-CCGCUcucuc -5'
6689 3' -66.3 NC_001847.1 + 909 0.76 0.095743
Target:  5'- -gCCGCCGGCCGCCGCccgccGGCGccGGGAa -3'
miRNA:   3'- ggGGCGGCCGGCGGCG-----CCGCu-CUCUc -5'
6689 3' -66.3 NC_001847.1 + 974 0.68 0.341716
Target:  5'- aCCCggGCCGGCggggcuucCGCCGCGGCGGcGGc- -3'
miRNA:   3'- gGGG--CGGCCG--------GCGGCGCCGCUcUCuc -5'
6689 3' -66.3 NC_001847.1 + 1086 0.71 0.21064
Target:  5'- gUCCaCGCCGGgCGCCGCGGcCGcGGGcGg -3'
miRNA:   3'- -GGG-GCGGCCgGCGGCGCC-GCuCUCuC- -5'
6689 3' -66.3 NC_001847.1 + 1235 0.66 0.476737
Target:  5'- gCCCGCaggccagguacacCGGCCGCaGCGGCGcgccGAGc -3'
miRNA:   3'- gGGGCG-------------GCCGGCGgCGCCGCucu-CUC- -5'
6689 3' -66.3 NC_001847.1 + 1730 0.67 0.402116
Target:  5'- gCCgCGCCgcGGCCaGCCGCGcGC-AGAGGu -3'
miRNA:   3'- -GGgGCGG--CCGG-CGGCGC-CGcUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 2089 0.67 0.402116
Target:  5'- gCCCCGCgGgGCCcgcGCgGCGGCGGGc--- -3'
miRNA:   3'- -GGGGCGgC-CGG---CGgCGCCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 2353 0.67 0.394203
Target:  5'- gCCgCGCCGGCCcgGCCGCgucGGCGGcGGcGg -3'
miRNA:   3'- -GGgGCGGCCGG--CGGCG---CCGCUcUCuC- -5'
6689 3' -66.3 NC_001847.1 + 2582 0.76 0.110641
Target:  5'- gCCUGCgCGGCCGCCGCGGCcgcacgcGAGcccgccgcgccGGAGg -3'
miRNA:   3'- gGGGCG-GCCGGCGGCGCCG-------CUC-----------UCUC- -5'
6689 3' -66.3 NC_001847.1 + 2781 0.69 0.300893
Target:  5'- cCCCCGCCGGCgGCCuccaggGCcGCGAGc--- -3'
miRNA:   3'- -GGGGCGGCCGgCGG------CGcCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 2878 0.66 0.42645
Target:  5'- aCgCGCgGGCCGCCGCGccGCGcGucGAGu -3'
miRNA:   3'- gGgGCGgCCGGCGGCGC--CGCuCu-CUC- -5'
6689 3' -66.3 NC_001847.1 + 3098 0.71 0.215523
Target:  5'- gCCgCgGCCGGCaggccgcggccCGCCGCGGCcGAGAGc- -3'
miRNA:   3'- -GG-GgCGGCCG-----------GCGGCGCCG-CUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 3239 0.7 0.275832
Target:  5'- gCCCgCGCCGuGCuCGCCgGCGGC-AGGGGc -3'
miRNA:   3'- -GGG-GCGGC-CG-GCGG-CGCCGcUCUCUc -5'
6689 3' -66.3 NC_001847.1 + 3356 0.66 0.42645
Target:  5'- aCgCUGCCGGCCGCCGCaauccGCGcgccGAGc -3'
miRNA:   3'- -GgGGCGGCCGGCGGCGc----CGCucu-CUC- -5'
6689 3' -66.3 NC_001847.1 + 3488 0.67 0.40132
Target:  5'- uCCCCGaCCGGCgGCaGCGGCGccgucacgcucccGGuGAu -3'
miRNA:   3'- -GGGGC-GGCCGgCGgCGCCGC-------------UCuCUc -5'
6689 3' -66.3 NC_001847.1 + 3535 0.66 0.434753
Target:  5'- -gCCGacuaCGGCCGCgagCGCGGCGGcggcguaguuGAGGGu -3'
miRNA:   3'- ggGGCg---GCCGGCG---GCGCCGCU----------CUCUC- -5'
6689 3' -66.3 NC_001847.1 + 3714 0.69 0.300893
Target:  5'- gCCCCG-CGGCCGCCGCGuaGCGcGcGGc -3'
miRNA:   3'- -GGGGCgGCCGGCGGCGC--CGCuCuCUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.