Results 1 - 20 of 487 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6689 | 3' | -66.3 | NC_001847.1 | + | 132716 | 0.91 | 0.008131 |
Target: 5'- gCCCUGCCGGCCGCCGCGGgggccccuCGGGGGAGg -3' miRNA: 3'- -GGGGCGGCCGGCGGCGCC--------GCUCUCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 85555 | 0.74 | 0.141273 |
Target: 5'- cUCCCGCUGcgcccaggcGCCGCCGuCGGCcGAGAGGu -3' miRNA: 3'- -GGGGCGGC---------CGGCGGC-GCCG-CUCUCUc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 34459 | 0.74 | 0.141273 |
Target: 5'- gCCgCGgUGGCCGCCgGCGGCGAG-GAu -3' miRNA: 3'- -GGgGCgGCCGGCGG-CGCCGCUCuCUc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 82455 | 0.75 | 0.119315 |
Target: 5'- aCCCCGCgcaCGGCCGCgUGCGGCGugccguGGGAc -3' miRNA: 3'- -GGGGCG---GCCGGCG-GCGCCGCu-----CUCUc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 90546 | 0.75 | 0.11645 |
Target: 5'- gCCCUGgCGGCCcucGCCGCGcGCGAGGGcGa -3' miRNA: 3'- -GGGGCgGCCGG---CGGCGC-CGCUCUCuC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 100652 | 0.75 | 0.113649 |
Target: 5'- gCCaggGCCGcGCUGCUGCGGCGGGGGGu -3' miRNA: 3'- gGGg--CGGC-CGGCGGCGCCGCUCUCUc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 84224 | 0.76 | 0.110912 |
Target: 5'- gCCCUGaCGGCCgggGCCGCcGCGGGGGAGg -3' miRNA: 3'- -GGGGCgGCCGG---CGGCGcCGCUCUCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 15984 | 0.76 | 0.110641 |
Target: 5'- gCCCCGCCgccccgcGGCgGCCGCGGCGccGAcGAGc -3' miRNA: 3'- -GGGGCGG-------CCGgCGGCGCCGCu-CU-CUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 2582 | 0.76 | 0.110641 |
Target: 5'- gCCUGCgCGGCCGCCGCGGCcgcacgcGAGcccgccgcgccGGAGg -3' miRNA: 3'- gGGGCG-GCCGGCGGCGCCG-------CUC-----------UCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 132784 | 0.76 | 0.108236 |
Target: 5'- gCCgCCGCCgacgcggccgGGCCGgCGCGGCGGGAGc- -3' miRNA: 3'- -GG-GGCGG----------CCGGCgGCGCCGCUCUCuc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 103722 | 0.76 | 0.095743 |
Target: 5'- -gCCGCCGGCCGCCGCccgccGGCGccGGGAa -3' miRNA: 3'- ggGGCGGCCGGCGGCG-----CCGCu-CUCUc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 97770 | 0.76 | 0.095743 |
Target: 5'- -gCCGCCGGCCGCCaGCa--GAGAGAGg -3' miRNA: 3'- ggGGCGGCCGGCGG-CGccgCUCUCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 108015 | 0.77 | 0.091139 |
Target: 5'- cCCUCGCCGGCucucuCGCCGCGGCGGccGGcGGGg -3' miRNA: 3'- -GGGGCGGCCG-----GCGGCGCCGCU--CU-CUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 76850 | 0.77 | 0.091139 |
Target: 5'- gCCUGCCGGCCGCCGCcgucgccgcGGcCGAGcacauGGAGg -3' miRNA: 3'- gGGGCGGCCGGCGGCG---------CC-GCUC-----UCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 34131 | 0.79 | 0.067642 |
Target: 5'- gCCUGCCgcgguGGCCGCCGCGGCGAGcgcgcugcgcGAGg -3' miRNA: 3'- gGGGCGG-----CCGGCGGCGCCGCUCu---------CUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 120076 | 0.81 | 0.047572 |
Target: 5'- cUCCUGCCGaGCCGCgCGgGGCGGGAGAu -3' miRNA: 3'- -GGGGCGGC-CGGCG-GCgCCGCUCUCUc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 64452 | 0.81 | 0.045227 |
Target: 5'- cCCCCGCC-GCCGcCCGCGGCGGcgcGGGGGg -3' miRNA: 3'- -GGGGCGGcCGGC-GGCGCCGCU---CUCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 12617 | 0.82 | 0.0373 |
Target: 5'- cCCCCGCuccucaacauggaggCGGCCGCUGCGGCugcggGGGAGAGg -3' miRNA: 3'- -GGGGCG---------------GCCGGCGGCGCCG-----CUCUCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 106746 | 0.85 | 0.021058 |
Target: 5'- gCCCgCGCUGG-CGCCGCGGCGGGGGGGg -3' miRNA: 3'- -GGG-GCGGCCgGCGGCGCCGCUCUCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 129929 | 1.08 | 0.000449 |
Target: 5'- gCCCCGCCGGCCGCCGCGGCGAGAGAGc -3' miRNA: 3'- -GGGGCGGCCGGCGGCGCCGCUCUCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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