Results 1 - 20 of 487 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6689 | 3' | -66.3 | NC_001847.1 | + | 116197 | 0.66 | 0.468872 |
Target: 5'- uCgCCGCCacggacGCCGCgGCGGCGcuGGAa -3' miRNA: 3'- -GgGGCGGc-----CGGCGgCGCCGCucUCUc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 5156 | 0.66 | 0.481134 |
Target: 5'- cCCaCCGCgCGuGCCuuuuuuuuguuuuaCCGCGGCGcGGGAGa -3' miRNA: 3'- -GG-GGCG-GC-CGGc-------------GGCGCCGCuCUCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 22599 | 0.66 | 0.477615 |
Target: 5'- gCCCGcCCGGUCG-CGUGGCaAGcGAGu -3' miRNA: 3'- gGGGC-GGCCGGCgGCGCCGcUCuCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 95662 | 0.66 | 0.477615 |
Target: 5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3' miRNA: 3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 81222 | 0.66 | 0.476737 |
Target: 5'- -gCCGCCGucGCCGUCGCcuccgGGCGGGGccgucgcGAGg -3' miRNA: 3'- ggGGCGGC--CGGCGGCG-----CCGCUCU-------CUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 65855 | 0.66 | 0.477615 |
Target: 5'- gUCCGCCcGCaCGCCGCGuaGAG-GAa -3' miRNA: 3'- gGGGCGGcCG-GCGGCGCcgCUCuCUc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 95743 | 0.66 | 0.477615 |
Target: 5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3' miRNA: 3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 95689 | 0.66 | 0.477615 |
Target: 5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3' miRNA: 3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 39754 | 0.66 | 0.468872 |
Target: 5'- uCCCCggcGCCGGCCucagaGCCGgCGGCGcGGu-- -3' miRNA: 3'- -GGGG---CGGCCGG-----CGGC-GCCGCuCUcuc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 61869 | 0.66 | 0.468872 |
Target: 5'- gCCUGCCGGCgC-CCGCggggguugcacGGCGAGcGGAa -3' miRNA: 3'- gGGGCGGCCG-GcGGCG-----------CCGCUC-UCUc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 27116 | 1.08 | 0.000449 |
Target: 5'- gCCCCGCCGGCCGCCGCGGCGAGAGAGc -3' miRNA: 3'- -GGGGCGGCCGGCGGCGCCGCUCUCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 30855 | 0.66 | 0.477615 |
Target: 5'- gCCgCCGCugCGGCUcuGCCGCGGCGGc---- -3' miRNA: 3'- -GG-GGCG--GCCGG--CGGCGCCGCUcucuc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 53954 | 0.66 | 0.477615 |
Target: 5'- gCgCGCCGGCuggCGCCGCcGCGAGcccuccGAGc -3' miRNA: 3'- gGgGCGGCCG---GCGGCGcCGCUCu-----CUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 1235 | 0.66 | 0.476737 |
Target: 5'- gCCCGCaggccagguacacCGGCCGCaGCGGCGcgccGAGc -3' miRNA: 3'- gGGGCG-------------GCCGGCGgCGCCGCucu-CUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 122509 | 0.66 | 0.472359 |
Target: 5'- cCCCCGCa-GCCGCaGCGGCcgccuccauguugagGAGcGGGGg -3' miRNA: 3'- -GGGGCGgcCGGCGgCGCCG---------------CUC-UCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 95770 | 0.66 | 0.477615 |
Target: 5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3' miRNA: 3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 123570 | 0.66 | 0.468872 |
Target: 5'- ---gGCCggGGCCGCCGCGaGCGGGGc-- -3' miRNA: 3'- ggggCGG--CCGGCGGCGC-CGCUCUcuc -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 31537 | 0.66 | 0.4628 |
Target: 5'- cCCCCGCCucgucggacgacgacGaggccggcGCCGCCgGCGGCGGGccggccucgcccuAGGGg -3' miRNA: 3'- -GGGGCGG---------------C--------CGGCGG-CGCCGCUC-------------UCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 95716 | 0.66 | 0.477615 |
Target: 5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3' miRNA: 3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5' |
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6689 | 3' | -66.3 | NC_001847.1 | + | 40968 | 0.66 | 0.476737 |
Target: 5'- gCCCGCgcgaGGCgGCCGCGcccagcagccgccGCGAGAu-- -3' miRNA: 3'- gGGGCGg---CCGgCGGCGC-------------CGCUCUcuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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