miRNA display CGI


Results 21 - 40 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 5156 0.66 0.481134
Target:  5'- cCCaCCGCgCGuGCCuuuuuuuuguuuuaCCGCGGCGcGGGAGa -3'
miRNA:   3'- -GG-GGCG-GC-CGGc-------------GGCGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 131944 0.66 0.443149
Target:  5'- gUgCGCCGGCgauggcggCGaCgGCGGCGAGAGcGGg -3'
miRNA:   3'- gGgGCGGCCG--------GC-GgCGCCGCUCUC-UC- -5'
6689 3' -66.3 NC_001847.1 + 29145 0.66 0.443149
Target:  5'- -aCCGCUGcGCCGUCGCcugccgcgaGGCGcuGGAGg -3'
miRNA:   3'- ggGGCGGC-CGGCGGCG---------CCGCucUCUC- -5'
6689 3' -66.3 NC_001847.1 + 80070 0.66 0.460211
Target:  5'- cCCCCG-CGGCCGCCagcauaaacGCGGCcAGcuccuccuuGAGg -3'
miRNA:   3'- -GGGGCgGCCGGCGG---------CGCCGcUCu--------CUC- -5'
6689 3' -66.3 NC_001847.1 + 1235 0.66 0.476737
Target:  5'- gCCCGCaggccagguacacCGGCCGCaGCGGCGcgccGAGc -3'
miRNA:   3'- gGGGCG-------------GCCGGCGgCGCCGCucu-CUC- -5'
6689 3' -66.3 NC_001847.1 + 13924 0.66 0.434753
Target:  5'- --gCGCuCGGUgccgCGCCGCGGC-AGGGGGg -3'
miRNA:   3'- gggGCG-GCCG----GCGGCGCCGcUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 53711 0.66 0.443149
Target:  5'- gCgCCGCCGGCgGCuCGCGGgGcGGAu-- -3'
miRNA:   3'- -GgGGCGGCCGgCG-GCGCCgC-UCUcuc -5'
6689 3' -66.3 NC_001847.1 + 95689 0.66 0.477615
Target:  5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3'
miRNA:   3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 58042 0.66 0.456771
Target:  5'- gCCCCGCCgcuaccgcgcgcgGGCCGCCGauuGGCGcgcgcgcgcgccgcAGcGGGu -3'
miRNA:   3'- -GGGGCGG-------------CCGGCGGCg--CCGC--------------UCuCUC- -5'
6689 3' -66.3 NC_001847.1 + 58158 0.66 0.460211
Target:  5'- uCCUCGaggCGGgCGaCCGCGGCGGGGu-- -3'
miRNA:   3'- -GGGGCg--GCCgGC-GGCGCCGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 95743 0.66 0.477615
Target:  5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3'
miRNA:   3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 95770 0.66 0.477615
Target:  5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3'
miRNA:   3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 32871 0.66 0.434753
Target:  5'- aCCUCa-CGGCgGCCGaCGGCGAGgccucGGGGg -3'
miRNA:   3'- -GGGGcgGCCGgCGGC-GCCGCUC-----UCUC- -5'
6689 3' -66.3 NC_001847.1 + 116385 0.66 0.434753
Target:  5'- gCCgCCGCCuuaGCCGCgGCGGCGGc---- -3'
miRNA:   3'- -GG-GGCGGc--CGGCGgCGCCGCUcucuc -5'
6689 3' -66.3 NC_001847.1 + 132527 0.66 0.451636
Target:  5'- gUCCCGCCGaagcaccuCCGgCGCGGCGGGc--- -3'
miRNA:   3'- -GGGGCGGCc-------GGCgGCGCCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 116197 0.66 0.468872
Target:  5'- uCgCCGCCacggacGCCGCgGCGGCGcuGGAa -3'
miRNA:   3'- -GgGGCGGc-----CGGCGgCGCCGCucUCUc -5'
6689 3' -66.3 NC_001847.1 + 122509 0.66 0.472359
Target:  5'- cCCCCGCa-GCCGCaGCGGCcgccuccauguugagGAGcGGGGg -3'
miRNA:   3'- -GGGGCGgcCGGCGgCGCCG---------------CUC-UCUC- -5'
6689 3' -66.3 NC_001847.1 + 30855 0.66 0.477615
Target:  5'- gCCgCCGCugCGGCUcuGCCGCGGCGGc---- -3'
miRNA:   3'- -GG-GGCG--GCCGG--CGGCGCCGCUcucuc -5'
6689 3' -66.3 NC_001847.1 + 64868 0.66 0.460211
Target:  5'- aCCCGCCaGGCgCGCguccuCGCGguacaGCGAGAGcGg -3'
miRNA:   3'- gGGGCGG-CCG-GCG-----GCGC-----CGCUCUCuC- -5'
6689 3' -66.3 NC_001847.1 + 30050 0.66 0.456771
Target:  5'- gCCCCGCCGccgacggcggcuuCCGCCGCGuGCcgcccGGGGAc -3'
miRNA:   3'- -GGGGCGGCc------------GGCGGCGC-CGc----UCUCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.