miRNA display CGI


Results 21 - 40 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 132784 0.76 0.108236
Target:  5'- gCCgCCGCCgacgcggccgGGCCGgCGCGGCGGGAGc- -3'
miRNA:   3'- -GG-GGCGG----------CCGGCgGCGCCGCUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 132716 0.91 0.008131
Target:  5'- gCCCUGCCGGCCGCCGCGGgggccccuCGGGGGAGg -3'
miRNA:   3'- -GGGGCGGCCGGCGGCGCC--------GCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 132597 0.69 0.294467
Target:  5'- gCCgCC-CCGGCC-CgGCGGCGGGAGc- -3'
miRNA:   3'- -GG-GGcGGCCGGcGgCGCCGCUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 132527 0.66 0.451636
Target:  5'- gUCCCGCCGaagcaccuCCGgCGCGGCGGGc--- -3'
miRNA:   3'- -GGGGCGGCc-------GGCgGCGCCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 132483 0.68 0.334643
Target:  5'- gCCgGCCGaGCCGCCG-GGCGA-AGGc -3'
miRNA:   3'- gGGgCGGC-CGGCGGCgCCGCUcUCUc -5'
6689 3' -66.3 NC_001847.1 + 132389 0.66 0.42645
Target:  5'- gCCggCGCCGgcGCCGCCGCGcCGGGccGGGGg -3'
miRNA:   3'- gGG--GCGGC--CGGCGGCGCcGCUC--UCUC- -5'
6689 3' -66.3 NC_001847.1 + 132365 0.66 0.434753
Target:  5'- gCCCUGgaGGCCGCC--GGCGGGGGc- -3'
miRNA:   3'- -GGGGCggCCGGCGGcgCCGCUCUCuc -5'
6689 3' -66.3 NC_001847.1 + 132054 0.67 0.386392
Target:  5'- gCCUGCCGGCCGCgGCcugcGCGccGGAc -3'
miRNA:   3'- gGGGCGGCCGGCGgCGc---CGCucUCUc -5'
6689 3' -66.3 NC_001847.1 + 132012 0.66 0.433918
Target:  5'- gCgCCGCCgGGCUcccggugcucucgGCCGCGGCGGGc--- -3'
miRNA:   3'- -GgGGCGG-CCGG-------------CGGCGCCGCUCucuc -5'
6689 3' -66.3 NC_001847.1 + 131958 0.66 0.443149
Target:  5'- -aCCGCUGcGCCGUCGCcugccgcgaGGCGcuGGAGg -3'
miRNA:   3'- ggGGCGGC-CGGCGGCG---------CCGCucUCUC- -5'
6689 3' -66.3 NC_001847.1 + 131944 0.66 0.443149
Target:  5'- gUgCGCCGGCgauggcggCGaCgGCGGCGAGAGcGGg -3'
miRNA:   3'- gGgGCGGCCG--------GC-GgCGCCGCUCUC-UC- -5'
6689 3' -66.3 NC_001847.1 + 131916 0.69 0.288148
Target:  5'- -aCCGCaaGCCGCgGCGGCGcGGAGGc -3'
miRNA:   3'- ggGGCGgcCGGCGgCGCCGC-UCUCUc -5'
6689 3' -66.3 NC_001847.1 + 131875 0.7 0.252467
Target:  5'- gCUCGCCGGCCG-CGCGGCGccGGc- -3'
miRNA:   3'- gGGGCGGCCGGCgGCGCCGCucUCuc -5'
6689 3' -66.3 NC_001847.1 + 131376 0.68 0.356185
Target:  5'- aUCCCGCCcgGGCUGCuCGaCGGCGAcGAa-- -3'
miRNA:   3'- -GGGGCGG--CCGGCG-GC-GCCGCU-CUcuc -5'
6689 3' -66.3 NC_001847.1 + 131345 0.66 0.43142
Target:  5'- gCCgCCGcCCGGCCGCgugcgcuucggcggCGCGGgCGAcacccgcGAGGGc -3'
miRNA:   3'- -GG-GGC-GGCCGGCG--------------GCGCC-GCU-------CUCUC- -5'
6689 3' -66.3 NC_001847.1 + 131247 0.7 0.252467
Target:  5'- gCCCgCGCUGGCuaCGCCGCGGCGccgcgcGAcGGGc -3'
miRNA:   3'- -GGG-GCGGCCG--GCGGCGCCGCu-----CU-CUC- -5'
6689 3' -66.3 NC_001847.1 + 131190 0.67 0.376391
Target:  5'- uCgCCGCCGGagacggcgccccccCCGCCGCGGCGccAGcgcGGGc -3'
miRNA:   3'- -GgGGCGGCC--------------GGCGGCGCCGC--UCu--CUC- -5'
6689 3' -66.3 NC_001847.1 + 130610 0.73 0.166875
Target:  5'- aCCCGCgGGCgGCCGCcGCGAGGc-- -3'
miRNA:   3'- gGGGCGgCCGgCGGCGcCGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 130534 0.68 0.371079
Target:  5'- gCCCgCGCCgagcuGGCCgaGCUGUGGCGgauggugggcGGGGAGg -3'
miRNA:   3'- -GGG-GCGG-----CCGG--CGGCGCCGC----------UCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 130233 0.68 0.366566
Target:  5'- -gCCGCCGGCgcggucggugucguuCGCaGCGGCGcGGGGGc -3'
miRNA:   3'- ggGGCGGCCG---------------GCGgCGCCGCuCUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.