miRNA display CGI


Results 41 - 60 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 10370 0.7 0.252467
Target:  5'- uCCCUGCuCGggucGCCGCuCGCGGCGGGGc-- -3'
miRNA:   3'- -GGGGCG-GC----CGGCG-GCGCCGCUCUcuc -5'
6689 3' -66.3 NC_001847.1 + 10500 0.67 0.402116
Target:  5'- uCCCCGaCGGCC-CCGCGcugcuGCGGGccauGGAGc -3'
miRNA:   3'- -GGGGCgGCCGGcGGCGC-----CGCUC----UCUC- -5'
6689 3' -66.3 NC_001847.1 + 10711 0.73 0.170856
Target:  5'- gCCCgCGCCGGCCaagcGCCGCcaGCGAGuuuAGGGg -3'
miRNA:   3'- -GGG-GCGGCCGG----CGGCGc-CGCUC---UCUC- -5'
6689 3' -66.3 NC_001847.1 + 11090 0.66 0.42645
Target:  5'- aCCCCGUgcuguucaaccaCGG-CGUCGUGGCGcuGGAGg -3'
miRNA:   3'- -GGGGCG------------GCCgGCGGCGCCGCucUCUC- -5'
6689 3' -66.3 NC_001847.1 + 11316 0.66 0.433918
Target:  5'- gCCCGCCgaGGCCGgCG-GGCGGcuggcgccggagcGGGAGc -3'
miRNA:   3'- gGGGCGG--CCGGCgGCgCCGCU-------------CUCUC- -5'
6689 3' -66.3 NC_001847.1 + 11345 0.69 0.314069
Target:  5'- gCCUGCCGcuGCCGCCGCcGCGcAGGccccGAGg -3'
miRNA:   3'- gGGGCGGC--CGGCGGCGcCGC-UCU----CUC- -5'
6689 3' -66.3 NC_001847.1 + 11813 0.67 0.402116
Target:  5'- uUCCGUcagaCGGCacaGCgCGCGGgGGGGGGGg -3'
miRNA:   3'- gGGGCG----GCCGg--CG-GCGCCgCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 12332 0.73 0.174921
Target:  5'- gCCCGCCGGCuCGCUggugaGCGGUGGGccuggcucgGGAGc -3'
miRNA:   3'- gGGGCGGCCG-GCGG-----CGCCGCUC---------UCUC- -5'
6689 3' -66.3 NC_001847.1 + 12617 0.82 0.0373
Target:  5'- cCCCCGCuccucaacauggaggCGGCCGCUGCGGCugcggGGGAGAGg -3'
miRNA:   3'- -GGGGCG---------------GCCGGCGGCGCCG-----CUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 12913 0.68 0.348897
Target:  5'- gCgCGCCGuGCCGCCGCGGgGGc---- -3'
miRNA:   3'- gGgGCGGC-CGGCGGCGCCgCUcucuc -5'
6689 3' -66.3 NC_001847.1 + 13140 0.66 0.460211
Target:  5'- gCgCCGCCuGCCGCgGCcGGCGGuuGGGc -3'
miRNA:   3'- -GgGGCGGcCGGCGgCG-CCGCUcuCUC- -5'
6689 3' -66.3 NC_001847.1 + 13840 0.67 0.402116
Target:  5'- gCCgCGCgCGGCguuuauucuuCGCUgaugGUGGCGAGGGGGg -3'
miRNA:   3'- -GGgGCG-GCCG----------GCGG----CGCCGCUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 13924 0.66 0.434753
Target:  5'- --gCGCuCGGUgccgCGCCGCGGC-AGGGGGg -3'
miRNA:   3'- gggGCG-GCCG----GCGGCGCCGcUCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 13975 0.71 0.236031
Target:  5'- gCCCGCCccuGGCCGgCaaGCGGCGGGucauGGAGc -3'
miRNA:   3'- gGGGCGG---CCGGCgG--CGCCGCUC----UCUC- -5'
6689 3' -66.3 NC_001847.1 + 14143 0.72 0.205853
Target:  5'- cUCCgGCCGGCUGCgcaGCGGCGGccGGGg -3'
miRNA:   3'- -GGGgCGGCCGGCGg--CGCCGCUcuCUC- -5'
6689 3' -66.3 NC_001847.1 + 14303 0.66 0.481134
Target:  5'- gCgUgGCCGGCCGCcuCucggggccucaucgaGCGGCGGGcAGAGa -3'
miRNA:   3'- -GgGgCGGCCGGCG--G---------------CGCCGCUC-UCUC- -5'
6689 3' -66.3 NC_001847.1 + 14313 0.7 0.275832
Target:  5'- gCCCCGCUcccGCUGCuCGCGGUGGGGccGGGc -3'
miRNA:   3'- -GGGGCGGc--CGGCG-GCGCCGCUCU--CUC- -5'
6689 3' -66.3 NC_001847.1 + 14679 0.68 0.348897
Target:  5'- gCgCgGCCGGCgG-CGCGGCGAuGGAGc -3'
miRNA:   3'- -GgGgCGGCCGgCgGCGCCGCUcUCUC- -5'
6689 3' -66.3 NC_001847.1 + 15033 0.67 0.378683
Target:  5'- -gCCG-CGGCCGCCG-GGCGAGcugugcGAGc -3'
miRNA:   3'- ggGGCgGCCGGCGGCgCCGCUCu-----CUC- -5'
6689 3' -66.3 NC_001847.1 + 15070 0.68 0.324921
Target:  5'- gCCCCGCgCGGCUcggcaggagccgggGCUaggagcaaaggggGCGGuCGGGGGAGg -3'
miRNA:   3'- -GGGGCG-GCCGG--------------CGG-------------CGCC-GCUCUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.