Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6689 | 5' | -52.6 | NC_001847.1 | + | 1760 | 0.7 | 0.825097 |
Target: 5'- -aCUCcaCCGCGCCGCGG-AAGGCc--- -3' miRNA: 3'- aaGAG--GGCGCGGCGCCaUUUUGuuuu -5' |
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6689 | 5' | -52.6 | NC_001847.1 | + | 1974 | 0.66 | 0.956493 |
Target: 5'- ---gCCCGCGcCCGCgcaGGUAgcAGGCAGAAa -3' miRNA: 3'- aagaGGGCGC-GGCG---CCAU--UUUGUUUU- -5' |
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6689 | 5' | -52.6 | NC_001847.1 | + | 5049 | 0.73 | 0.674664 |
Target: 5'- gUCccagCCCGCGUCGCGGUcgGGCGc-- -3' miRNA: 3'- aAGa---GGGCGCGGCGCCAuuUUGUuuu -5' |
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6689 | 5' | -52.6 | NC_001847.1 | + | 6357 | 0.68 | 0.902804 |
Target: 5'- ----aCCGCGCCGCGGgcGuagccgcugcggcAGCAGAAg -3' miRNA: 3'- aagagGGCGCGGCGCCauU-------------UUGUUUU- -5' |
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6689 | 5' | -52.6 | NC_001847.1 | + | 8971 | 0.67 | 0.922146 |
Target: 5'- cUCaUCUCGgGCCGgGGgcGGGCAGAc -3' miRNA: 3'- aAG-AGGGCgCGGCgCCauUUUGUUUu -5' |
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6689 | 5' | -52.6 | NC_001847.1 | + | 10510 | 0.72 | 0.700248 |
Target: 5'- ---cCCCGCGCUgcugcgggccauggaGCGGUGGAACGAGGa -3' miRNA: 3'- aagaGGGCGCGG---------------CGCCAUUUUGUUUU- -5' |
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6689 | 5' | -52.6 | NC_001847.1 | + | 12481 | 0.69 | 0.859224 |
Target: 5'- -cUUCCCGCGUgGCGGcgGGGGCGGc- -3' miRNA: 3'- aaGAGGGCGCGgCGCCa-UUUUGUUuu -5' |
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6689 | 5' | -52.6 | NC_001847.1 | + | 14298 | 0.66 | 0.952366 |
Target: 5'- cUCUCCgGCGUCGCGGc--------- -3' miRNA: 3'- aAGAGGgCGCGGCGCCauuuuguuuu -5' |
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6689 | 5' | -52.6 | NC_001847.1 | + | 14318 | 0.74 | 0.588534 |
Target: 5'- -gCUCCCGCuGCuCGCGGUGGGGCc--- -3' miRNA: 3'- aaGAGGGCG-CG-GCGCCAUUUUGuuuu -5' |
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6689 | 5' | -52.6 | NC_001847.1 | + | 14762 | 0.71 | 0.778133 |
Target: 5'- gUCgCCCGCGgCGUGGUAGcGCAGc- -3' miRNA: 3'- aAGaGGGCGCgGCGCCAUUuUGUUuu -5' |
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6689 | 5' | -52.6 | NC_001847.1 | + | 15063 | 0.7 | 0.797427 |
Target: 5'- aUCUCCCGCcCCGCGcGgcucGGCAGGAg -3' miRNA: 3'- aAGAGGGCGcGGCGC-Cauu-UUGUUUU- -5' |
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6689 | 5' | -52.6 | NC_001847.1 | + | 16311 | 0.69 | 0.842586 |
Target: 5'- gUCaCCCGCGgCGCGGguguAGGCAAGc -3' miRNA: 3'- aAGaGGGCGCgGCGCCau--UUUGUUUu -5' |
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6689 | 5' | -52.6 | NC_001847.1 | + | 16501 | 0.69 | 0.842586 |
Target: 5'- -cCUCCCGCGC-GCGGccugAGGugGAGAg -3' miRNA: 3'- aaGAGGGCGCGgCGCCa---UUUugUUUU- -5' |
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6689 | 5' | -52.6 | NC_001847.1 | + | 17625 | 0.7 | 0.797427 |
Target: 5'- -cCUCgUCGuCGCCGCGcGUGGAGCGGAAc -3' miRNA: 3'- aaGAG-GGC-GCGGCGC-CAUUUUGUUUU- -5' |
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6689 | 5' | -52.6 | NC_001847.1 | + | 19853 | 0.67 | 0.922146 |
Target: 5'- -cCUCCgGCGCCGCuGUGGAcACGc-- -3' miRNA: 3'- aaGAGGgCGCGGCGcCAUUU-UGUuuu -5' |
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6689 | 5' | -52.6 | NC_001847.1 | + | 20083 | 0.66 | 0.956493 |
Target: 5'- -gCUCCCGCGgCGCGGcccGGCc--- -3' miRNA: 3'- aaGAGGGCGCgGCGCCauuUUGuuuu -5' |
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6689 | 5' | -52.6 | NC_001847.1 | + | 20620 | 0.67 | 0.919793 |
Target: 5'- -gUUCCCGCGCCGCGccgaccgcuGCAGu- -3' miRNA: 3'- aaGAGGGCGCGGCGCcauuu----UGUUuu -5' |
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6689 | 5' | -52.6 | NC_001847.1 | + | 21469 | 0.78 | 0.380985 |
Target: 5'- -cCUCCCGCcCCGCGGgcGAAUAAAAc -3' miRNA: 3'- aaGAGGGCGcGGCGCCauUUUGUUUU- -5' |
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6689 | 5' | -52.6 | NC_001847.1 | + | 21749 | 0.66 | 0.956493 |
Target: 5'- ---gCCCGCGCgCGCGGggGGGCc--- -3' miRNA: 3'- aagaGGGCGCG-GCGCCauUUUGuuuu -5' |
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6689 | 5' | -52.6 | NC_001847.1 | + | 24235 | 0.67 | 0.916184 |
Target: 5'- aUCUCCacguucagccgcCGCGCgGCGGgcgAGAGCAu-- -3' miRNA: 3'- aAGAGG------------GCGCGgCGCCa--UUUUGUuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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