miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 5' -52.6 NC_001847.1 + 124282 0.78 0.380985
Target:  5'- -cCUCCCGCcCCGCGGgcGAAUAAAAc -3'
miRNA:   3'- aaGAGGGCGcGGCGCCauUUUGUUUU- -5'
6689 5' -52.6 NC_001847.1 + 116235 0.67 0.921562
Target:  5'- -gCUCCCGCGCaggagcaCGUGGUGcu-CAAGAu -3'
miRNA:   3'- aaGAGGGCGCG-------GCGCCAUuuuGUUUU- -5'
6689 5' -52.6 NC_001847.1 + 24235 0.67 0.916184
Target:  5'- aUCUCCacguucagccgcCGCGCgGCGGgcgAGAGCAu-- -3'
miRNA:   3'- aAGAGG------------GCGCGgCGCCa--UUUUGUuuu -5'
6689 5' -52.6 NC_001847.1 + 68153 0.67 0.916184
Target:  5'- cUUCUCCgGCGCCGCGcc---GCAGc- -3'
miRNA:   3'- -AAGAGGgCGCGGCGCcauuuUGUUuu -5'
6689 5' -52.6 NC_001847.1 + 78726 0.68 0.909957
Target:  5'- gUCUUCCGCGaCGCGGUGGc------ -3'
miRNA:   3'- aAGAGGGCGCgGCGCCAUUuuguuuu -5'
6689 5' -52.6 NC_001847.1 + 6357 0.68 0.902804
Target:  5'- ----aCCGCGCCGCGGgcGuagccgcugcggcAGCAGAAg -3'
miRNA:   3'- aagagGGCGCGGCGCCauU-------------UUGUUUU- -5'
6689 5' -52.6 NC_001847.1 + 34709 0.68 0.896718
Target:  5'- -aCUUgCGCGCCGCGcUGGAGCGc-- -3'
miRNA:   3'- aaGAGgGCGCGGCGCcAUUUUGUuuu -5'
6689 5' -52.6 NC_001847.1 + 52849 0.68 0.882455
Target:  5'- aUUCUCCCGC-CC-CGGUA--ACAGAu -3'
miRNA:   3'- -AAGAGGGCGcGGcGCCAUuuUGUUUu -5'
6689 5' -52.6 NC_001847.1 + 87188 0.69 0.867205
Target:  5'- -cCUCCaCGCGCUGCuGG-AGAACAAc- -3'
miRNA:   3'- aaGAGG-GCGCGGCG-CCaUUUUGUUuu -5'
6689 5' -52.6 NC_001847.1 + 12481 0.69 0.859224
Target:  5'- -cUUCCCGCGUgGCGGcgGGGGCGGc- -3'
miRNA:   3'- aaGAGGGCGCGgCGCCa-UUUUGUUuu -5'
6689 5' -52.6 NC_001847.1 + 16501 0.69 0.842586
Target:  5'- -cCUCCCGCGC-GCGGccugAGGugGAGAg -3'
miRNA:   3'- aaGAGGGCGCGgCGCCa---UUUugUUUU- -5'
6689 5' -52.6 NC_001847.1 + 104573 0.7 0.825097
Target:  5'- -aCUCcaCCGCGCCGCGG-AAGGCc--- -3'
miRNA:   3'- aaGAG--GGCGCGGCGCCaUUUUGuuuu -5'
6689 5' -52.6 NC_001847.1 + 54802 0.7 0.797427
Target:  5'- -cCUUCCGCGCCGCGcuGgcGAGCGc-- -3'
miRNA:   3'- aaGAGGGCGCGGCGC--CauUUUGUuuu -5'
6689 5' -52.6 NC_001847.1 + 17625 0.7 0.797427
Target:  5'- -cCUCgUCGuCGCCGCGcGUGGAGCGGAAc -3'
miRNA:   3'- aaGAG-GGC-GCGGCGC-CAUUUUGUUUU- -5'
6689 5' -52.6 NC_001847.1 + 133388 0.71 0.778133
Target:  5'- -cCUUCCGCGgCGCGGUGGAGu---- -3'
miRNA:   3'- aaGAGGGCGCgGCGCCAUUUUguuuu -5'
6689 5' -52.6 NC_001847.1 + 132128 0.72 0.717108
Target:  5'- cUCggcgcggCCCGCGaCGCGGUGGAGCGc-- -3'
miRNA:   3'- aAGa------GGGCGCgGCGCCAUUUUGUuuu -5'
6689 5' -52.6 NC_001847.1 + 10510 0.72 0.700248
Target:  5'- ---cCCCGCGCUgcugcgggccauggaGCGGUGGAACGAGGa -3'
miRNA:   3'- aagaGGGCGCGG---------------CGCCAUUUUGUUUU- -5'
6689 5' -52.6 NC_001847.1 + 5049 0.73 0.674664
Target:  5'- gUCccagCCCGCGUCGCGGUcgGGCGc-- -3'
miRNA:   3'- aAGa---GGGCGCGGCGCCAuuUUGUuuu -5'
6689 5' -52.6 NC_001847.1 + 118839 0.75 0.525131
Target:  5'- ---aCCCGCGCCGCGGgu-GACGGu- -3'
miRNA:   3'- aagaGGGCGCGGCGCCauuUUGUUuu -5'
6689 5' -52.6 NC_001847.1 + 129966 1.04 0.00884
Target:  5'- cUUCUCCCGCGCCGCGGUAAAACAAAAa -3'
miRNA:   3'- -AAGAGGGCGCGGCGCCAUUUUGUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.