miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6690 3' -56.5 NC_001847.1 + 113688 0.78 0.25198
Target:  5'- cGGGGcGGGAgGGGGAAGGGGGAgccGGAGc -3'
miRNA:   3'- uUCUCuUCCU-CCCCUUCCCCUU---CCUC- -5'
6690 3' -56.5 NC_001847.1 + 130005 0.83 0.116862
Target:  5'- cGGuGggGGuGGGGggGGGGAAGGGa -3'
miRNA:   3'- uUCuCuuCCuCCCCuuCCCCUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 132665 0.83 0.123226
Target:  5'- gAGGAGGAGGAGGaGGAagaAGGGGAcGGGGa -3'
miRNA:   3'- -UUCUCUUCCUCC-CCU---UCCCCUuCCUC- -5'
6690 3' -56.5 NC_001847.1 + 113129 0.81 0.15202
Target:  5'- gAGGAGGacgAGGAGGcGGAcgaggAGGGGGAGGAGa -3'
miRNA:   3'- -UUCUCU---UCCUCC-CCU-----UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 124194 0.8 0.177037
Target:  5'- nGGGGAGGGAGGGGAaggAGGGGAuucgggccggccgAGGAu -3'
miRNA:   3'- uUCUCUUCCUCCCCU---UCCCCU-------------UCCUc -5'
6690 3' -56.5 NC_001847.1 + 114046 0.8 0.182089
Target:  5'- cGGGcGGAcGGGGGGGAGGGGGgAAGGGGa -3'
miRNA:   3'- -UUC-UCUuCCUCCCCUUCCCC-UUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 52976 0.79 0.21035
Target:  5'- --aAGggGGGGGGGAAGGGGGAcgcgcaggcauggcGGAGc -3'
miRNA:   3'- uucUCuuCCUCCCCUUCCCCUU--------------CCUC- -5'
6690 3' -56.5 NC_001847.1 + 84460 0.79 0.211937
Target:  5'- --cGGggGGuGGGGAGcGGGGggGGGGg -3'
miRNA:   3'- uucUCuuCCuCCCCUU-CCCCuuCCUC- -5'
6690 3' -56.5 NC_001847.1 + 110235 0.78 0.245899
Target:  5'- ------uGGGGGGGggGGGGggGGGGc -3'
miRNA:   3'- uucucuuCCUCCCCuuCCCCuuCCUC- -5'
6690 3' -56.5 NC_001847.1 + 129166 0.84 0.102269
Target:  5'- cAGGGAAGaAGGGGGaaAGGGGAAGGAGg -3'
miRNA:   3'- uUCUCUUCcUCCCCU--UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 127866 0.84 0.099564
Target:  5'- cGGAGcAAGGAacgauGGGGggGGGGAGGGGGa -3'
miRNA:   3'- uUCUC-UUCCU-----CCCCuuCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 128704 0.84 0.096927
Target:  5'- aGGGAGGAGGAGcGGGGugcggggugcgAGGGGGAGGGGg -3'
miRNA:   3'- -UUCUCUUCCUC-CCCU-----------UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 123986 0.98 0.011483
Target:  5'- gAGGGGAAGGAGGGGAgggAGGGGAAGGAGg -3'
miRNA:   3'- -UUCUCUUCCUCCCCU---UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 124022 0.98 0.011483
Target:  5'- gAGGGGAAGGAGGGGAgggAGGGGAAGGAGg -3'
miRNA:   3'- -UUCUCUUCCUCCCCU---UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 124058 0.98 0.011483
Target:  5'- gAGGGGAAGGAGGGGAgggAGGGGAAGGAGg -3'
miRNA:   3'- -UUCUCUUCCUCCCCU---UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 124094 0.98 0.011483
Target:  5'- gAGGGGAAGGAGGGGAgggAGGGGAAGGAGg -3'
miRNA:   3'- -UUCUCUUCCUCCCCU---UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 124130 0.98 0.011483
Target:  5'- gAGGGGAAGGAGGGGAgggAGGGGAAGGAGg -3'
miRNA:   3'- -UUCUCUUCCUCCCCU---UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 124166 0.98 0.011483
Target:  5'- gAGGGGAAGGAGGGGAgggAGGGGAAGGAGg -3'
miRNA:   3'- -UUCUCUUCCUCCCCU---UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 127584 0.87 0.059436
Target:  5'- --aGGggGGAGGGGAGGGGGggGGGc -3'
miRNA:   3'- uucUCuuCCUCCCCUUCCCCuuCCUc -5'
6690 3' -56.5 NC_001847.1 + 109495 0.85 0.080237
Target:  5'- gGGGGGAGGGAGGaGGAGGauGGGGAGGAGg -3'
miRNA:   3'- -UUCUCUUCCUCC-CCUUC--CCCUUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.