miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6690 3' -56.5 NC_001847.1 + 68 0.66 0.847043
Target:  5'- cGGGcGggGGcGGGGuGGGGGAuGGGc -3'
miRNA:   3'- -UUCuCuuCCuCCCCuUCCCCUuCCUc -5'
6690 3' -56.5 NC_001847.1 + 838 0.69 0.655763
Target:  5'- -cGAGGAcGAGGaGGAGGaGGaGGAGGAGa -3'
miRNA:   3'- uuCUCUUcCUCC-CCUUC-CC-CUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 4861 0.71 0.542184
Target:  5'- cAGGGGAGGGGGGGggGcGGcGGGcAGc -3'
miRNA:   3'- uUCUCUUCCUCCCCuuCcCCuUCC-UC- -5'
6690 3' -56.5 NC_001847.1 + 6682 0.85 0.080237
Target:  5'- gGGGGGAGGGAGGaGGAGGauGGGGAGGAGg -3'
miRNA:   3'- -UUCUCUUCCUCC-CCUUC--CCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 6841 0.69 0.676479
Target:  5'- -cGGGGAGuuGGGGggGGGGgcGGc- -3'
miRNA:   3'- uuCUCUUCcuCCCCuuCCCCuuCCuc -5'
6690 3' -56.5 NC_001847.1 + 7422 0.78 0.245899
Target:  5'- ------uGGGGGGGggGGGGggGGGGc -3'
miRNA:   3'- uucucuuCCUCCCCuuCCCCuuCCUC- -5'
6690 3' -56.5 NC_001847.1 + 7622 0.73 0.435825
Target:  5'- uGGGGggGuGGGuGGGggGGuGGAGGGAc -3'
miRNA:   3'- uUCUCuuC-CUC-CCCuuCC-CCUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 8604 0.74 0.400201
Target:  5'- cAGGGgcGGcgcucggccGGGGGcGGGGGGAGGAGc -3'
miRNA:   3'- uUCUCuuCC---------UCCCCuUCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 8993 0.67 0.785692
Target:  5'- cAGAcGggGGuGGGGGcuGGGuGGgcGGAGc -3'
miRNA:   3'- uUCU-CuuCCuCCCCU--UCC-CCuuCCUC- -5'
6690 3' -56.5 NC_001847.1 + 10316 0.81 0.15202
Target:  5'- gAGGAGGacgAGGAGGcGGAcgaggAGGGGGAGGAGa -3'
miRNA:   3'- -UUCUCU---UCCUCC-CCU-----UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 10875 0.78 0.25198
Target:  5'- cGGGGcGGGAgGGGGAAGGGGGAgccGGAGc -3'
miRNA:   3'- uUCUCuUCCU-CCCCUUCCCCUU---CCUC- -5'
6690 3' -56.5 NC_001847.1 + 11233 0.8 0.182089
Target:  5'- cGGGcGGAcGGGGGGGAGGGGGgAAGGGGa -3'
miRNA:   3'- -UUC-UCUuCCUCCCCUUCCCC-UUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 15099 0.73 0.454309
Target:  5'- uAGGAGcaAAGGGGGcGGucGGGGGAGGGc -3'
miRNA:   3'- -UUCUC--UUCCUCC-CCuuCCCCUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 18065 0.72 0.522083
Target:  5'- cGGuuGGGGAcGGGGAGGGcGGAGGcGAGg -3'
miRNA:   3'- uUCucUUCCU-CCCCUUCC-CCUUC-CUC- -5'
6690 3' -56.5 NC_001847.1 + 21173 0.98 0.011483
Target:  5'- gAGGGGAAGGAGGGGAgggAGGGGAAGGAGg -3'
miRNA:   3'- -UUCUCUUCCUCCCCU---UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 21209 0.98 0.011483
Target:  5'- gAGGGGAAGGAGGGGAgggAGGGGAAGGAGg -3'
miRNA:   3'- -UUCUCUUCCUCCCCU---UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 21245 0.98 0.011483
Target:  5'- gAGGGGAAGGAGGGGAgggAGGGGAAGGAGg -3'
miRNA:   3'- -UUCUCUUCCUCCCCU---UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 21281 0.98 0.011483
Target:  5'- gAGGGGAAGGAGGGGAgggAGGGGAAGGAGg -3'
miRNA:   3'- -UUCUCUUCCUCCCCU---UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 21317 0.98 0.011483
Target:  5'- gAGGGGAAGGAGGGGAgggAGGGGAAGGAGg -3'
miRNA:   3'- -UUCUCUUCCUCCCCU---UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 21353 0.98 0.011483
Target:  5'- gAGGGGAAGGAGGGGAgggAGGGGAAGGAGg -3'
miRNA:   3'- -UUCUCUUCCUCCCCU---UCCCCUUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.