miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6690 3' -56.5 NC_001847.1 + 134950 0.7 0.614166
Target:  5'- ---cGggGGcGGGGgcGGGGgcGGGGg -3'
miRNA:   3'- uucuCuuCCuCCCCuuCCCCuuCCUC- -5'
6690 3' -56.5 NC_001847.1 + 134900 0.75 0.334789
Target:  5'- gGAGcGAGGGAGGaGGAgcgAGGGaGGAGGAGc -3'
miRNA:   3'- -UUCuCUUCCUCC-CCU---UCCC-CUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 134867 0.78 0.25198
Target:  5'- gAGGAGGAGcGAGGGaGGAGGagcgaGGGAGGAGg -3'
miRNA:   3'- -UUCUCUUC-CUCCC-CUUCC-----CCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 134825 0.78 0.25198
Target:  5'- gAGGAGGAGcGAGGGaGGAGGagcgaGGGAGGAGg -3'
miRNA:   3'- -UUCUCUUC-CUCCC-CUUCC-----CCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 134783 0.78 0.25198
Target:  5'- gAGGAGGAGcGAGGGaGGAGGagcgaGGGAGGAGg -3'
miRNA:   3'- -UUCUCUUC-CUCCC-CUUCC-----CCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 134741 0.78 0.25198
Target:  5'- gAGGAGGAGcGAGGGaGGAGGagcgaGGGAGGAGg -3'
miRNA:   3'- -UUCUCUUC-CUCCC-CUUCC-----CCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 132665 0.83 0.123226
Target:  5'- gAGGAGGAGGAGGaGGAagaAGGGGAcGGGGa -3'
miRNA:   3'- -UUCUCUUCCUCC-CCU---UCCCCUuCCUC- -5'
6690 3' -56.5 NC_001847.1 + 132633 0.66 0.8218
Target:  5'- cGAGGGAAGGAagaaGGGccGAGGaGGAGGAGn -3'
miRNA:   3'- -UUCUCUUCCUc---CCC--UUCCcCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 132563 0.67 0.794956
Target:  5'- gAAGAGGAGGAagaGGaGGAagAGGaGGAAGaGGGc -3'
miRNA:   3'- -UUCUCUUCCU---CC-CCU--UCC-CCUUC-CUC- -5'
6690 3' -56.5 NC_001847.1 + 132527 0.7 0.603782
Target:  5'- gAAGAGGAGGAagaGGaGGAaaAGGaGGAagAGGAGg -3'
miRNA:   3'- -UUCUCUUCCU---CC-CCU--UCC-CCU--UCCUC- -5'
6690 3' -56.5 NC_001847.1 + 132487 0.75 0.374733
Target:  5'- cGAGGcGGAGGAcGGGGAGGacGGGGAGGAc -3'
miRNA:   3'- -UUCU-CUUCCU-CCCCUUC--CCCUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 130035 1.07 0.002804
Target:  5'- aAAGAGAAGGAGGGGAAGGGGAAGGAGa -3'
miRNA:   3'- -UUCUCUUCCUCCCCUUCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 130005 0.83 0.116862
Target:  5'- cGGuGggGGuGGGGggGGGGAAGGGa -3'
miRNA:   3'- uUCuCuuCCuCCCCuuCCCCUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 129266 0.75 0.374733
Target:  5'- -cGAGGcAGGGGcGGGAAuGGGGAGGGGa -3'
miRNA:   3'- uuCUCU-UCCUC-CCCUU-CCCCUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 129166 0.84 0.102269
Target:  5'- cAGGGAAGaAGGGGGaaAGGGGAAGGAGg -3'
miRNA:   3'- uUCUCUUCcUCCCCU--UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 129024 0.69 0.69602
Target:  5'- -uGGGcGGGAagcGGGGAGucccaauGGGGAGGGGGu -3'
miRNA:   3'- uuCUCuUCCU---CCCCUU-------CCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 128913 0.7 0.617285
Target:  5'- gGAGGGAgcaguggcgcugggcAGGAagcGGGGAGucccaauGGGGAGGGGGu -3'
miRNA:   3'- -UUCUCU---------------UCCU---CCCCUU-------CCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 128704 0.84 0.096927
Target:  5'- aGGGAGGAGGAGcGGGGugcggggugcgAGGGGGAGGGGg -3'
miRNA:   3'- -UUCUCUUCCUC-CCCU-----------UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 127866 0.84 0.099564
Target:  5'- cGGAGcAAGGAacgauGGGGggGGGGAGGGGGa -3'
miRNA:   3'- uUCUC-UUCCU-----CCCCuuCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 127584 0.87 0.059436
Target:  5'- --aGGggGGAGGGGAGGGGGggGGGc -3'
miRNA:   3'- uucUCuuCCUCCCCUUCCCCuuCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.