miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6690 3' -56.5 NC_001847.1 + 21381 0.8 0.177037
Target:  5'- nGGGGAGGGAGGGGAaggAGGGGAuucgggccggccgAGGAu -3'
miRNA:   3'- uUCUCUUCCUCCCCU---UCCCCU-------------UCCUc -5'
6690 3' -56.5 NC_001847.1 + 21571 0.73 0.47321
Target:  5'- gGGGAGAGGGcGGGaGAGGGGGccgcGGGGc -3'
miRNA:   3'- -UUCUCUUCCuCCC-CUUCCCCuu--CCUC- -5'
6690 3' -56.5 NC_001847.1 + 22672 0.74 0.417782
Target:  5'- cGAGGGAucGGGGGGAugGGGGcGAGGGAu -3'
miRNA:   3'- -UUCUCUucCUCCCCU--UCCC-CUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 22716 0.74 0.417782
Target:  5'- cGAGGGAucGGGGGGAugGGGGcGAGGGAu -3'
miRNA:   3'- -UUCUCUucCUCCCCU--UCCC-CUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 22747 0.69 0.697044
Target:  5'- gGGGGGAuGGGGGcgaGGGAucGGGGGGAuGGGGg -3'
miRNA:   3'- -UUCUCU-UCCUC---CCCU--UCCCCUU-CCUC- -5'
6690 3' -56.5 NC_001847.1 + 22782 0.76 0.291088
Target:  5'- cGAGGGAucGGGGGGAuGGGGAuGGGGg -3'
miRNA:   3'- -UUCUCUucCUCCCCUuCCCCUuCCUC- -5'
6690 3' -56.5 NC_001847.1 + 23376 0.7 0.603782
Target:  5'- cGAGAuGAGGGuGGGGGcuGGGuGGgcGGAGc -3'
miRNA:   3'- -UUCU-CUUCCuCCCCU--UCC-CCuuCCUC- -5'
6690 3' -56.5 NC_001847.1 + 24771 0.87 0.059436
Target:  5'- --aGGggGGAGGGGAGGGGGggGGGc -3'
miRNA:   3'- uucUCuuCCUCCCCUUCCCCuuCCUc -5'
6690 3' -56.5 NC_001847.1 + 25053 0.84 0.099564
Target:  5'- cGGAGcAAGGAacgauGGGGggGGGGAGGGGGa -3'
miRNA:   3'- uUCUC-UUCCU-----CCCCuuCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 25891 0.84 0.094355
Target:  5'- aGGGAGGAGGAGcGGGGugcggggugcgaGGGGGAGGGGGg -3'
miRNA:   3'- -UUCUCUUCCUC-CCCU------------UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 26100 0.7 0.617285
Target:  5'- gGAGGGAgcaguggcgcugggcAGGAagcGGGGAGucccaauGGGGAGGGGGu -3'
miRNA:   3'- -UUCUCU---------------UCCU---CCCCUU-------CCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 26211 0.69 0.69602
Target:  5'- -uGGGcGGGAagcGGGGAGucccaauGGGGAGGGGGu -3'
miRNA:   3'- uuCUCuUCCU---CCCCUU-------CCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 26353 0.84 0.102269
Target:  5'- cAGGGAAGaAGGGGGaaAGGGGAAGGAGg -3'
miRNA:   3'- uUCUCUUCcUCCCCU--UCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 26453 0.75 0.374733
Target:  5'- -cGAGGcAGGGGcGGGAAuGGGGAGGGGa -3'
miRNA:   3'- uuCUCU-UCCUC-CCCUU-CCCCUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 27192 0.83 0.116862
Target:  5'- cGGuGggGGuGGGGggGGGGAAGGGa -3'
miRNA:   3'- uUCuCuuCCuCCCCuuCCCCUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 27222 1.07 0.002804
Target:  5'- aAAGAGAAGGAGGGGAAGGGGAAGGAGa -3'
miRNA:   3'- -UUCUCUUCCUCCCCUUCCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 27906 0.67 0.804068
Target:  5'- -cGAGGccgAGGGGGcGGAGGGcGcGGAGGAc -3'
miRNA:   3'- uuCUCU---UCCUCC-CCUUCC-C-CUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 29674 0.75 0.374733
Target:  5'- cGAGGcGGAGGAcGGGGAGGacGGGGAGGAc -3'
miRNA:   3'- -UUCU-CUUCCU-CCCCUUC--CCCUUCCUc -5'
6690 3' -56.5 NC_001847.1 + 29714 0.7 0.603782
Target:  5'- gAAGAGGAGGAagaGGaGGAaaAGGaGGAagAGGAGg -3'
miRNA:   3'- -UUCUCUUCCU---CC-CCU--UCC-CCU--UCCUC- -5'
6690 3' -56.5 NC_001847.1 + 29750 0.67 0.794956
Target:  5'- gAAGAGGAGGAagaGGaGGAagAGGaGGAAGaGGGc -3'
miRNA:   3'- -UUCUCUUCCU---CC-CCU--UCC-CCUUC-CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.