Results 21 - 40 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6690 | 3' | -56.5 | NC_001847.1 | + | 25053 | 0.84 | 0.099564 |
Target: 5'- cGGAGcAAGGAacgauGGGGggGGGGAGGGGGa -3' miRNA: 3'- uUCUC-UUCCU-----CCCCuuCCCCUUCCUC- -5' |
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6690 | 3' | -56.5 | NC_001847.1 | + | 127866 | 0.84 | 0.099564 |
Target: 5'- cGGAGcAAGGAacgauGGGGggGGGGAGGGGGa -3' miRNA: 3'- uUCUC-UUCCU-----CCCCuuCCCCUUCCUC- -5' |
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6690 | 3' | -56.5 | NC_001847.1 | + | 46781 | 0.84 | 0.099564 |
Target: 5'- --aAGAGGGGGGGGggGGGGAGGGc- -3' miRNA: 3'- uucUCUUCCUCCCCuuCCCCUUCCuc -5' |
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6690 | 3' | -56.5 | NC_001847.1 | + | 26353 | 0.84 | 0.102269 |
Target: 5'- cAGGGAAGaAGGGGGaaAGGGGAAGGAGg -3' miRNA: 3'- uUCUCUUCcUCCCCU--UCCCCUUCCUC- -5' |
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6690 | 3' | -56.5 | NC_001847.1 | + | 129166 | 0.84 | 0.102269 |
Target: 5'- cAGGGAAGaAGGGGGaaAGGGGAAGGAGg -3' miRNA: 3'- uUCUCUUCcUCCCCU--UCCCCUUCCUC- -5' |
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6690 | 3' | -56.5 | NC_001847.1 | + | 130005 | 0.83 | 0.116862 |
Target: 5'- cGGuGggGGuGGGGggGGGGAAGGGa -3' miRNA: 3'- uUCuCuuCCuCCCCuuCCCCUUCCUc -5' |
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6690 | 3' | -56.5 | NC_001847.1 | + | 27192 | 0.83 | 0.116862 |
Target: 5'- cGGuGggGGuGGGGggGGGGAAGGGa -3' miRNA: 3'- uUCuCuuCCuCCCCuuCCCCUUCCUc -5' |
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6690 | 3' | -56.5 | NC_001847.1 | + | 132665 | 0.83 | 0.123226 |
Target: 5'- gAGGAGGAGGAGGaGGAagaAGGGGAcGGGGa -3' miRNA: 3'- -UUCUCUUCCUCC-CCU---UCCCCUuCCUC- -5' |
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6690 | 3' | -56.5 | NC_001847.1 | + | 29852 | 0.83 | 0.123226 |
Target: 5'- gAGGAGGAGGAGGaGGAagaAGGGGAcGGGGa -3' miRNA: 3'- -UUCUCUUCCUCC-CCU---UCCCCUuCCUC- -5' |
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6690 | 3' | -56.5 | NC_001847.1 | + | 10316 | 0.81 | 0.15202 |
Target: 5'- gAGGAGGacgAGGAGGcGGAcgaggAGGGGGAGGAGa -3' miRNA: 3'- -UUCUCU---UCCUCC-CCU-----UCCCCUUCCUC- -5' |
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6690 | 3' | -56.5 | NC_001847.1 | + | 113129 | 0.81 | 0.15202 |
Target: 5'- gAGGAGGacgAGGAGGcGGAcgaggAGGGGGAGGAGa -3' miRNA: 3'- -UUCUCU---UCCUCC-CCU-----UCCCCUUCCUC- -5' |
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6690 | 3' | -56.5 | NC_001847.1 | + | 21381 | 0.8 | 0.177037 |
Target: 5'- nGGGGAGGGAGGGGAaggAGGGGAuucgggccggccgAGGAu -3' miRNA: 3'- uUCUCUUCCUCCCCU---UCCCCU-------------UCCUc -5' |
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6690 | 3' | -56.5 | NC_001847.1 | + | 124194 | 0.8 | 0.177037 |
Target: 5'- nGGGGAGGGAGGGGAaggAGGGGAuucgggccggccgAGGAu -3' miRNA: 3'- uUCUCUUCCUCCCCU---UCCCCU-------------UCCUc -5' |
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6690 | 3' | -56.5 | NC_001847.1 | + | 11233 | 0.8 | 0.182089 |
Target: 5'- cGGGcGGAcGGGGGGGAGGGGGgAAGGGGa -3' miRNA: 3'- -UUC-UCUuCCUCCCCUUCCCC-UUCCUC- -5' |
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6690 | 3' | -56.5 | NC_001847.1 | + | 114046 | 0.8 | 0.182089 |
Target: 5'- cGGGcGGAcGGGGGGGAGGGGGgAAGGGGa -3' miRNA: 3'- -UUC-UCUuCCUCCCCUUCCCC-UUCCUC- -5' |
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6690 | 3' | -56.5 | NC_001847.1 | + | 52976 | 0.79 | 0.21035 |
Target: 5'- --aAGggGGGGGGGAAGGGGGAcgcgcaggcauggcGGAGc -3' miRNA: 3'- uucUCuuCCUCCCCUUCCCCUU--------------CCUC- -5' |
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6690 | 3' | -56.5 | NC_001847.1 | + | 84460 | 0.79 | 0.211937 |
Target: 5'- --cGGggGGuGGGGAGcGGGGggGGGGg -3' miRNA: 3'- uucUCuuCCuCCCCUU-CCCCuuCCUC- -5' |
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6690 | 3' | -56.5 | NC_001847.1 | + | 110235 | 0.78 | 0.245899 |
Target: 5'- ------uGGGGGGGggGGGGggGGGGc -3' miRNA: 3'- uucucuuCCUCCCCuuCCCCuuCCUC- -5' |
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6690 | 3' | -56.5 | NC_001847.1 | + | 7422 | 0.78 | 0.245899 |
Target: 5'- ------uGGGGGGGggGGGGggGGGGc -3' miRNA: 3'- uucucuuCCUCCCCuuCCCCuuCCUC- -5' |
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6690 | 3' | -56.5 | NC_001847.1 | + | 10875 | 0.78 | 0.25198 |
Target: 5'- cGGGGcGGGAgGGGGAAGGGGGAgccGGAGc -3' miRNA: 3'- uUCUCuUCCU-CCCCUUCCCCUU---CCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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