miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6690 3' -56.5 NC_001847.1 + 125560 0.69 0.697044
Target:  5'- gGGGGGAuGGGGGcgaGGGAucGGGGGGAuGGGGg -3'
miRNA:   3'- -UUCUCU-UCCUC---CCCU--UCCCCUU-CCUC- -5'
6690 3' -56.5 NC_001847.1 + 22747 0.69 0.697044
Target:  5'- gGGGGGAuGGGGGcgaGGGAucGGGGGGAuGGGGg -3'
miRNA:   3'- -UUCUCU-UCCUC---CCCU--UCCCCUU-CCUC- -5'
6690 3' -56.5 NC_001847.1 + 26211 0.69 0.69602
Target:  5'- -uGGGcGGGAagcGGGGAGucccaauGGGGAGGGGGu -3'
miRNA:   3'- uuCUCuUCCU---CCCCUU-------CCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 94520 0.7 0.624565
Target:  5'- uGGGGGAaaGGGAGGGaccGAGGGGaAAGGGc -3'
miRNA:   3'- -UUCUCU--UCCUCCCc--UUCCCC-UUCCUc -5'
6690 3' -56.5 NC_001847.1 + 128913 0.7 0.617285
Target:  5'- gGAGGGAgcaguggcgcugggcAGGAagcGGGGAGucccaauGGGGAGGGGGu -3'
miRNA:   3'- -UUCUCU---------------UCCU---CCCCUU-------CCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 134950 0.7 0.614166
Target:  5'- ---cGggGGcGGGGgcGGGGgcGGGGg -3'
miRNA:   3'- uucuCuuCCuCCCCuuCCCCuuCCUC- -5'
6690 3' -56.5 NC_001847.1 + 126189 0.7 0.603782
Target:  5'- cGAGAuGAGGGuGGGGGcuGGGuGGgcGGAGc -3'
miRNA:   3'- -UUCU-CUUCCuCCCCU--UCC-CCuuCCUC- -5'
6690 3' -56.5 NC_001847.1 + 132527 0.7 0.603782
Target:  5'- gAAGAGGAGGAagaGGaGGAaaAGGaGGAagAGGAGg -3'
miRNA:   3'- -UUCUCUUCCU---CC-CCU--UCC-CCU--UCCUC- -5'
6690 3' -56.5 NC_001847.1 + 102675 0.7 0.593419
Target:  5'- -cGAGGGcGGGGGGgcGGGGcGGGGGc -3'
miRNA:   3'- uuCUCUUcCUCCCCuuCCCCuUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 29714 0.7 0.603782
Target:  5'- gAAGAGGAGGAagaGGaGGAaaAGGaGGAagAGGAGg -3'
miRNA:   3'- -UUCUCUUCCU---CC-CCU--UCC-CCU--UCCUC- -5'
6690 3' -56.5 NC_001847.1 + 23376 0.7 0.603782
Target:  5'- cGAGAuGAGGGuGGGGGcuGGGuGGgcGGAGc -3'
miRNA:   3'- -UUCU-CUUCCuCCCCU--UCC-CCuuCCUC- -5'
6690 3' -56.5 NC_001847.1 + 32137 0.7 0.614166
Target:  5'- ---cGggGGcGGGGgcGGGGgcGGGGg -3'
miRNA:   3'- uucuCuuCCuCCCCuuCCCCuuCCUC- -5'
6690 3' -56.5 NC_001847.1 + 26100 0.7 0.617285
Target:  5'- gGAGGGAgcaguggcgcugggcAGGAagcGGGGAGucccaauGGGGAGGGGGu -3'
miRNA:   3'- -UUCUCU---------------UCCU---CCCCUU-------CCCCUUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 107674 0.71 0.542184
Target:  5'- cAGGGGAGGGGGGGggGcGGcGGGcAGc -3'
miRNA:   3'- uUCUCUUCCUCCCCuuCcCCuUCC-UC- -5'
6690 3' -56.5 NC_001847.1 + 54443 0.71 0.583086
Target:  5'- cAGAGAc-GAGGGGGGcGGGGAcgagcccgAGGAGg -3'
miRNA:   3'- uUCUCUucCUCCCCUU-CCCCU--------UCCUC- -5'
6690 3' -56.5 NC_001847.1 + 4861 0.71 0.542184
Target:  5'- cAGGGGAGGGGGGGggGcGGcGGGcAGc -3'
miRNA:   3'- uUCUCUUCCUCCCCuuCcCCuUCC-UC- -5'
6690 3' -56.5 NC_001847.1 + 18065 0.72 0.522083
Target:  5'- cGGuuGGGGAcGGGGAGGGcGGAGGcGAGg -3'
miRNA:   3'- uUCucUUCCU-CCCCUUCC-CCUUC-CUC- -5'
6690 3' -56.5 NC_001847.1 + 68207 0.72 0.482808
Target:  5'- gGGGAGAcGuGAaaagGGGGAAGGGG-GGGAGg -3'
miRNA:   3'- -UUCUCUuC-CU----CCCCUUCCCCuUCCUC- -5'
6690 3' -56.5 NC_001847.1 + 124384 0.73 0.47321
Target:  5'- gGGGAGAGGGcGGGaGAGGGGGccgcGGGGc -3'
miRNA:   3'- -UUCUCUUCCuCCC-CUUCCCCuu--CCUC- -5'
6690 3' -56.5 NC_001847.1 + 110435 0.73 0.435825
Target:  5'- uGGGGggGuGGGuGGGggGGuGGAGGGAc -3'
miRNA:   3'- uUCUCuuC-CUC-CCCuuCC-CCUUCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.