Results 21 - 33 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6727 | 3' | -60.1 | NC_001875.2 | + | 30411 | 0.69 | 0.549239 |
Target: 5'- uGGcCGGGa--CUGucGACCUGGCCAGCg -3' miRNA: 3'- gCCuGCUCcacGAC--CUGGACCGGUCG- -5' |
|||||||
6727 | 3' | -60.1 | NC_001875.2 | + | 37314 | 0.69 | 0.501041 |
Target: 5'- gCGGcACG-GGUGCUGGAaCCcGGCgAuGCg -3' miRNA: 3'- -GCC-UGCuCCACGACCU-GGaCCGgU-CG- -5' |
|||||||
6727 | 3' | -60.1 | NC_001875.2 | + | 6676 | 0.7 | 0.491618 |
Target: 5'- aGcGACGAGGaccGgUGGACggcGGCCAGCg -3' miRNA: 3'- gC-CUGCUCCa--CgACCUGga-CCGGUCG- -5' |
|||||||
6727 | 3' | -60.1 | NC_001875.2 | + | 64846 | 0.7 | 0.491618 |
Target: 5'- aGGAuuuuCGGcGGcUGCUGGACgaGGCgGGCg -3' miRNA: 3'- gCCU----GCU-CC-ACGACCUGgaCCGgUCG- -5' |
|||||||
6727 | 3' | -60.1 | NC_001875.2 | + | 22904 | 0.7 | 0.463864 |
Target: 5'- cCGG-UGAuGUGCUGGagcgguGCgUGGCCGGCg -3' miRNA: 3'- -GCCuGCUcCACGACC------UGgACCGGUCG- -5' |
|||||||
6727 | 3' | -60.1 | NC_001875.2 | + | 20402 | 0.7 | 0.454795 |
Target: 5'- uGGugGGGcUGUUGGGCCauuccGGCCuGCg -3' miRNA: 3'- gCCugCUCcACGACCUGGa----CCGGuCG- -5' |
|||||||
6727 | 3' | -60.1 | NC_001875.2 | + | 40949 | 0.7 | 0.445823 |
Target: 5'- uGGAUGugguGGUGCUGGGCac-GCgCAGCa -3' miRNA: 3'- gCCUGCu---CCACGACCUGgacCG-GUCG- -5' |
|||||||
6727 | 3' | -60.1 | NC_001875.2 | + | 112875 | 0.71 | 0.402509 |
Target: 5'- -cGACGAGGccacGCucgUGGGCCaagcgcUGGCCAGCa -3' miRNA: 3'- gcCUGCUCCa---CG---ACCUGG------ACCGGUCG- -5' |
|||||||
6727 | 3' | -60.1 | NC_001875.2 | + | 112519 | 0.72 | 0.36984 |
Target: 5'- uCGGGCGcuGGUGCUGGcgGCUcGGgCAGCu -3' miRNA: 3'- -GCCUGCu-CCACGACC--UGGaCCgGUCG- -5' |
|||||||
6727 | 3' | -60.1 | NC_001875.2 | + | 57420 | 0.72 | 0.36984 |
Target: 5'- uCGGACGAcuuugaGGUGCUGGACCccuCCAcGCu -3' miRNA: 3'- -GCCUGCU------CCACGACCUGGaccGGU-CG- -5' |
|||||||
6727 | 3' | -60.1 | NC_001875.2 | + | 105835 | 0.73 | 0.339031 |
Target: 5'- aCGGGCGcGGUGUgUGGG--UGGCCGGCa -3' miRNA: 3'- -GCCUGCuCCACG-ACCUggACCGGUCG- -5' |
|||||||
6727 | 3' | -60.1 | NC_001875.2 | + | 45330 | 0.78 | 0.158838 |
Target: 5'- -cGACGAccucaacgcGGUGCUGGAgacguaCCUGGCCAGUa -3' miRNA: 3'- gcCUGCU---------CCACGACCU------GGACCGGUCG- -5' |
|||||||
6727 | 3' | -60.1 | NC_001875.2 | + | 451 | 1.11 | 0.0007 |
Target: 5'- gCGGACGAGGUGCUGGACCUGGCCAGCa -3' miRNA: 3'- -GCCUGCUCCACGACCUGGACCGGUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home