miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6727 3' -60.1 NC_001875.2 + 30411 0.69 0.549239
Target:  5'- uGGcCGGGa--CUGucGACCUGGCCAGCg -3'
miRNA:   3'- gCCuGCUCcacGAC--CUGGACCGGUCG- -5'
6727 3' -60.1 NC_001875.2 + 37314 0.69 0.501041
Target:  5'- gCGGcACG-GGUGCUGGAaCCcGGCgAuGCg -3'
miRNA:   3'- -GCC-UGCuCCACGACCU-GGaCCGgU-CG- -5'
6727 3' -60.1 NC_001875.2 + 64846 0.7 0.491618
Target:  5'- aGGAuuuuCGGcGGcUGCUGGACgaGGCgGGCg -3'
miRNA:   3'- gCCU----GCU-CC-ACGACCUGgaCCGgUCG- -5'
6727 3' -60.1 NC_001875.2 + 6676 0.7 0.491618
Target:  5'- aGcGACGAGGaccGgUGGACggcGGCCAGCg -3'
miRNA:   3'- gC-CUGCUCCa--CgACCUGga-CCGGUCG- -5'
6727 3' -60.1 NC_001875.2 + 22904 0.7 0.463864
Target:  5'- cCGG-UGAuGUGCUGGagcgguGCgUGGCCGGCg -3'
miRNA:   3'- -GCCuGCUcCACGACC------UGgACCGGUCG- -5'
6727 3' -60.1 NC_001875.2 + 20402 0.7 0.454795
Target:  5'- uGGugGGGcUGUUGGGCCauuccGGCCuGCg -3'
miRNA:   3'- gCCugCUCcACGACCUGGa----CCGGuCG- -5'
6727 3' -60.1 NC_001875.2 + 40949 0.7 0.445823
Target:  5'- uGGAUGugguGGUGCUGGGCac-GCgCAGCa -3'
miRNA:   3'- gCCUGCu---CCACGACCUGgacCG-GUCG- -5'
6727 3' -60.1 NC_001875.2 + 112875 0.71 0.402509
Target:  5'- -cGACGAGGccacGCucgUGGGCCaagcgcUGGCCAGCa -3'
miRNA:   3'- gcCUGCUCCa---CG---ACCUGG------ACCGGUCG- -5'
6727 3' -60.1 NC_001875.2 + 57420 0.72 0.36984
Target:  5'- uCGGACGAcuuugaGGUGCUGGACCccuCCAcGCu -3'
miRNA:   3'- -GCCUGCU------CCACGACCUGGaccGGU-CG- -5'
6727 3' -60.1 NC_001875.2 + 112519 0.72 0.36984
Target:  5'- uCGGGCGcuGGUGCUGGcgGCUcGGgCAGCu -3'
miRNA:   3'- -GCCUGCu-CCACGACC--UGGaCCgGUCG- -5'
6727 3' -60.1 NC_001875.2 + 105835 0.73 0.339031
Target:  5'- aCGGGCGcGGUGUgUGGG--UGGCCGGCa -3'
miRNA:   3'- -GCCUGCuCCACG-ACCUggACCGGUCG- -5'
6727 3' -60.1 NC_001875.2 + 45330 0.78 0.158838
Target:  5'- -cGACGAccucaacgcGGUGCUGGAgacguaCCUGGCCAGUa -3'
miRNA:   3'- gcCUGCU---------CCACGACCU------GGACCGGUCG- -5'
6727 3' -60.1 NC_001875.2 + 451 1.11 0.0007
Target:  5'- gCGGACGAGGUGCUGGACCUGGCCAGCa -3'
miRNA:   3'- -GCCUGCUCCACGACCUGGACCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.