miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6728 5' -53.5 NC_001875.2 + 37741 0.67 0.902612
Target:  5'- gGCcgGcCGCGGCGCUcgcGCCGGC-GCAUCc -3'
miRNA:   3'- -UGaaC-GUGUUGCGG---UGGCCGaUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 12450 0.67 0.902612
Target:  5'- ---cGCACAcgGCGgCguGCCGGCUGCAc- -3'
miRNA:   3'- ugaaCGUGU--UGCgG--UGGCCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 21253 0.67 0.902612
Target:  5'- aGCUgguccagGCGCGcGCGCgGCgCGGCUACGa- -3'
miRNA:   3'- -UGAa------CGUGU-UGCGgUG-GCCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 57554 0.67 0.895924
Target:  5'- uUUUGCACAACGCCAaucgCGuGC-ACAUg -3'
miRNA:   3'- uGAACGUGUUGCGGUg---GC-CGaUGUAg -5'
6728 5' -53.5 NC_001875.2 + 113053 0.67 0.895241
Target:  5'- ---aGCACAAUGCCcacuacagaGCUGGCUuugauggcgacgcGCGUCa -3'
miRNA:   3'- ugaaCGUGUUGCGG---------UGGCCGA-------------UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 29867 0.68 0.891792
Target:  5'- --aUGCACAACGCCugcgucgcguucgccACCGGCg----- -3'
miRNA:   3'- ugaACGUGUUGCGG---------------UGGCCGauguag -5'
6728 5' -53.5 NC_001875.2 + 47798 0.68 0.888988
Target:  5'- gUUUGCGCAACaGCUGCCGGUaguaggGCcgCg -3'
miRNA:   3'- uGAACGUGUUG-CGGUGGCCGa-----UGuaG- -5'
6728 5' -53.5 NC_001875.2 + 7547 0.68 0.888988
Target:  5'- --aUGCGCAACGaccugaCGCCGGCggACGa- -3'
miRNA:   3'- ugaACGUGUUGCg-----GUGGCCGa-UGUag -5'
6728 5' -53.5 NC_001875.2 + 87448 0.68 0.888988
Target:  5'- ---cGCGCGGCG-UGCCgGGCUGCAUUg -3'
miRNA:   3'- ugaaCGUGUUGCgGUGG-CCGAUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 87488 0.68 0.888988
Target:  5'- cUUUGCGCGguaACGUUugCGGCUucguucacagcaGCGUCg -3'
miRNA:   3'- uGAACGUGU---UGCGGugGCCGA------------UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 35867 0.68 0.882535
Target:  5'- -gUUGCGCAGCGCguuugauggaauugaGCCGGC-GCGUUg -3'
miRNA:   3'- ugAACGUGUUGCGg--------------UGGCCGaUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 10200 0.68 0.881806
Target:  5'- --cUGCACGGCGUagucgagcagCugUGGCUugAUCa -3'
miRNA:   3'- ugaACGUGUUGCG----------GugGCCGAugUAG- -5'
6728 5' -53.5 NC_001875.2 + 40094 0.68 0.881806
Target:  5'- ---gGCGCugacGCGCCACUGGCUGg--- -3'
miRNA:   3'- ugaaCGUGu---UGCGGUGGCCGAUguag -5'
6728 5' -53.5 NC_001875.2 + 69196 0.68 0.881806
Target:  5'- cGCgUGCGCGGCGCCGaCGGCcagUACGc- -3'
miRNA:   3'- -UGaACGUGUUGCGGUgGCCG---AUGUag -5'
6728 5' -53.5 NC_001875.2 + 74438 0.68 0.881806
Target:  5'- --aUGCGCuguucGCGCguaaACCGGCgcgGCGUCg -3'
miRNA:   3'- ugaACGUGu----UGCGg---UGGCCGa--UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 81620 0.68 0.874385
Target:  5'- gUUUGCGgGACGCgaACCGGCUGauaAUUa -3'
miRNA:   3'- uGAACGUgUUGCGg-UGGCCGAUg--UAG- -5'
6728 5' -53.5 NC_001875.2 + 101050 0.68 0.86673
Target:  5'- cGCgcGCuGCGGCGCCcggACCGGCUuacGCGUUa -3'
miRNA:   3'- -UGaaCG-UGUUGCGG---UGGCCGA---UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 40260 0.68 0.86673
Target:  5'- gGCaaGUACAGCGCCAgCCaguGGC-GCGUCa -3'
miRNA:   3'- -UGaaCGUGUUGCGGU-GG---CCGaUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 82180 0.68 0.86673
Target:  5'- uACgUGCGCAAcCGCCGCgGGCagUACGg- -3'
miRNA:   3'- -UGaACGUGUU-GCGGUGgCCG--AUGUag -5'
6728 5' -53.5 NC_001875.2 + 64897 0.68 0.86673
Target:  5'- ---cGCGCAACcCCACCGuGUUGCAg- -3'
miRNA:   3'- ugaaCGUGUUGcGGUGGC-CGAUGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.