Results 21 - 40 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6728 | 5' | -53.5 | NC_001875.2 | + | 38469 | 0.66 | 0.932224 |
Target: 5'- uCUUGCA---UGCCGCCGGCcuUGUCg -3' miRNA: 3'- uGAACGUguuGCGGUGGCCGauGUAG- -5' |
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6728 | 5' | -53.5 | NC_001875.2 | + | 39229 | 0.66 | 0.926817 |
Target: 5'- ---aGCACGACGCCG-CGGC-GCAc- -3' miRNA: 3'- ugaaCGUGUUGCGGUgGCCGaUGUag -5' |
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6728 | 5' | -53.5 | NC_001875.2 | + | 121918 | 0.66 | 0.926817 |
Target: 5'- ---gGCACAGCauaGCCAUugCGGCcACAUCu -3' miRNA: 3'- ugaaCGUGUUG---CGGUG--GCCGaUGUAG- -5' |
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6728 | 5' | -53.5 | NC_001875.2 | + | 119004 | 0.66 | 0.926817 |
Target: 5'- uGCUaGC-CGGCGCCGCCGGgUuuGUg -3' miRNA: 3'- -UGAaCGuGUUGCGGUGGCCgAugUAg -5' |
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6728 | 5' | -53.5 | NC_001875.2 | + | 70635 | 0.66 | 0.926817 |
Target: 5'- cAUUUGUACGACGgCGCCGcGuUUGCGUg -3' miRNA: 3'- -UGAACGUGUUGCgGUGGC-C-GAUGUAg -5' |
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6728 | 5' | -53.5 | NC_001875.2 | + | 10611 | 0.66 | 0.926817 |
Target: 5'- cACUga-GC-GCGCCGCCGcGCcGCGUCa -3' miRNA: 3'- -UGAacgUGuUGCGGUGGC-CGaUGUAG- -5' |
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6728 | 5' | -53.5 | NC_001875.2 | + | 6080 | 0.66 | 0.926817 |
Target: 5'- cACcUGCGCGGCGCUacccaacgccauGCCGGCgcuguacgacUACAUg -3' miRNA: 3'- -UGaACGUGUUGCGG------------UGGCCG----------AUGUAg -5' |
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6728 | 5' | -53.5 | NC_001875.2 | + | 58107 | 0.66 | 0.926817 |
Target: 5'- --cUGCACGAUuagCGCCGGCaugGCGUCg -3' miRNA: 3'- ugaACGUGUUGcg-GUGGCCGa--UGUAG- -5' |
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6728 | 5' | -53.5 | NC_001875.2 | + | 44157 | 0.67 | 0.921151 |
Target: 5'- cGCUggGCACGGCGCCcguCgGGCUGucCGUg -3' miRNA: 3'- -UGAa-CGUGUUGCGGu--GgCCGAU--GUAg -5' |
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6728 | 5' | -53.5 | NC_001875.2 | + | 36756 | 0.67 | 0.921151 |
Target: 5'- uGCaaGgGCGACGCgCAgCGGCUGCGc- -3' miRNA: 3'- -UGaaCgUGUUGCG-GUgGCCGAUGUag -5' |
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6728 | 5' | -53.5 | NC_001875.2 | + | 92749 | 0.67 | 0.921151 |
Target: 5'- cACUcUGCACAGCGgCAaccuuCCGGCgGCAg- -3' miRNA: 3'- -UGA-ACGUGUUGCgGU-----GGCCGaUGUag -5' |
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6728 | 5' | -53.5 | NC_001875.2 | + | 68716 | 0.67 | 0.917628 |
Target: 5'- cGCggUGCGCGAcCGCCGCCGccgcggcggcaaaccGCUGC-UCc -3' miRNA: 3'- -UGa-ACGUGUU-GCGGUGGC---------------CGAUGuAG- -5' |
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6728 | 5' | -53.5 | NC_001875.2 | + | 37897 | 0.67 | 0.915228 |
Target: 5'- gGCUUGCugGcGCGgCACUGGC-ACcgCg -3' miRNA: 3'- -UGAACGugU-UGCgGUGGCCGaUGuaG- -5' |
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6728 | 5' | -53.5 | NC_001875.2 | + | 11934 | 0.67 | 0.915228 |
Target: 5'- cGCgcgGCGCGccgacugugcGCGCgACCGGCggcGCGUUg -3' miRNA: 3'- -UGaa-CGUGU----------UGCGgUGGCCGa--UGUAG- -5' |
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6728 | 5' | -53.5 | NC_001875.2 | + | 4536 | 0.67 | 0.915228 |
Target: 5'- gAUUUGaGCAgcGCGCCACgCGGCaACAUg -3' miRNA: 3'- -UGAACgUGU--UGCGGUG-GCCGaUGUAg -5' |
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6728 | 5' | -53.5 | NC_001875.2 | + | 62416 | 0.67 | 0.914621 |
Target: 5'- uGCgUGgGCAagcguuuGCGCUgcGCCGGCUGCAa- -3' miRNA: 3'- -UGaACgUGU-------UGCGG--UGGCCGAUGUag -5' |
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6728 | 5' | -53.5 | NC_001875.2 | + | 37583 | 0.67 | 0.909047 |
Target: 5'- uGCgccgGCGCgAGCGCCgcgGCCGGCcGCAc- -3' miRNA: 3'- -UGaa--CGUG-UUGCGG---UGGCCGaUGUag -5' |
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6728 | 5' | -53.5 | NC_001875.2 | + | 47827 | 0.67 | 0.909047 |
Target: 5'- ---cGCGCGgcGCGCCG-CGGCcGCGUCc -3' miRNA: 3'- ugaaCGUGU--UGCGGUgGCCGaUGUAG- -5' |
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6728 | 5' | -53.5 | NC_001875.2 | + | 119742 | 0.67 | 0.909047 |
Target: 5'- uGCUggUGUACcgccaaaguCGCCGCCGG-UGCGUCu -3' miRNA: 3'- -UGA--ACGUGuu-------GCGGUGGCCgAUGUAG- -5' |
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6728 | 5' | -53.5 | NC_001875.2 | + | 35792 | 0.67 | 0.902612 |
Target: 5'- cACUUGCGCuGCGCCAgauaguccgcgUCGGCguuggGCGcguUCa -3' miRNA: 3'- -UGAACGUGuUGCGGU-----------GGCCGa----UGU---AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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